Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01335 ATGGAGTCTTGGAGCTATGGTTCAGAAGGGAAGGGTTTTGTGTTATCTGATGAAATGGTTTCACCTACTGATGCTCTTGGAAGAAGTAGAACAGTGTTAATGGGTTGGGACCTGAAAAGCCCTTGTAATTACGAAAGCACCATGCTGGTCTCAGGTCGAGAGGCCATCGAGAACCAGGGATTCATGGAATTGGGCTTCCCTGACATCATCAGAAAACCAATTTCTGATAACCCAAGTGGGGAGTTTTGGGGTGGTAAGATTGATAGCAGAAGAGTATCTTCTCCAATTTGTATGGTTACTCCAAAAGCATTTTTTGGAGAAGAGGAATCGAATTCAAGGCTTTCAAATTCTGCCGGGGATTCGAACAGTCAGGAGTCGTCACTCATTGATTTGAAGCTGGGGAGCTTGGCTGATTATCGAGATGCCCAGAATGGTAAATCCTCCAAACCAGTGGTGTCTTTTGTGCCGGAAAAGAGAGCACGCACAATGAGTTTGACCTCTCAGACTCCCTTTTGCCAAGTTCATGGTTGCAACATGGATCTCAGCTCCTCAAAGGACTACCACAAGAGGCATAAAGTTTGTGAGGTTCACTCAAAAACGGCCAAAGTGATCGTGAATGGCATCGAACAGAGGTTTTGTCAACAGTGTAGCAGGTTTCATTTGTTGGGTGAATTTGATGATGGTAAGCGCAGTTGTCGTAAACGCCTTGCAGGCCACAATGAGCGTCGCAGGAAGCCTCAACTGGATAATCACCCTGGTAAAGCCGGGAAGCTCCTTCTATCAGATCACGGTGGCAGGTTTCTGGGAACTTCCTTACCTACAAGGACATCATTTATGTGCTCAGATATATTTCCGAGTGGAATTCTACATCCAGTTAAATATGAAACCGGTAACTGGTGCAGGCATGTAAAATTAGAAGATGAGGCAATTTATAGTTGTCAGTCACCAGTACCTATTACAAACGGGCATTTGGTTCCAAAATCCTTTCTCCCTTCATATGGCATGGAGAAAGAGTGTCCTTCGTTGCATGGAAATGGGATTGAAACTGCACCAGGAAGCATTTTATATGAGAACAGTAACCGCTACCCACATGCAGGCCCAAATTCCATTTCACAATCAGTGTTACGGAGTGCATCATCAGGAAGTGAAGATTTCCCTGTTTTCGATACGGAATCAACCATTCAAGGCTTATCCAGGGTCTCAAACTCCGGGTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGAACTCATCAAGCCATTCTTCGGGAATTCCCATGACTGGGCCCCTGATCATCCAAGGCCGTCCTGCCAATTACAGTGTGGGTCAGTTCTCTGAAAAGCTTTTAGGAGTAAGCTCGCAGGCTTCAACAAGTGTGACATCAAATAGGTTTTCTTCATCGGCGATGAACTCTGTGGAAGTTGATCACCTGGGGCATGTACTGGTTTCTGATGCCAGCAATGATGTCGATTTTGAAGTCCACACCAATAGGTTTTTTCAAGGGTCCGACTTTGTGAGTGCCAAGGATCCGCTCTCTCGTGAACAGGATTCCACTGTTGATTTGCTTCAATTGTCGTCGCAGCTGGAACGTGTGGAACGTCAGAGGCATTCTGTGCAAGTGAAGCATGAAAATGATTTCTTCTACTGCCTGCCTATCACTTAA 1662 0.4549 MESWSYGSEGKGFVLSDEMVSPTDALGRSRTVLMGWDLKSPCNYESTMLVSGREAIENQGFMELGFPDIIRKPISDNPSGEFWGGKIDSRRVSSPICMVTPKAFFGEEESNSRLSNSAGDSNSQESSLIDLKLGSLADYRDAQNGKSSKPVVSFVPEKRARTMSLTSQTPFCQVHGCNMDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLGEFDDGKRSCRKRLAGHNERRRKPQLDNHPGKAGKLLLSDHGGRFLGTSLPTRTSFMCSDIFPSGILHPVKYETGNWCRHVKLEDEAIYSCQSPVPITNGHLVPKSFLPSYGMEKECPSLHGNGIETAPGSILYENSNRYPHAGPNSISQSVLRSASSGSEDFPVFDTESTIQGLSRVSNSGCALSLLSSQSQNSSSHSSGIPMTGPLIIQGRPANYSVGQFSEKLLGVSSQASTSVTSNRFSSSAMNSVEVDHLGHVLVSDASNDVDFEVHTNRFFQGSDFVSAKDPLSREQDSTVDLLQLSSQLERVERQRHSVQVKHENDFFYCLPIT* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01335 553 Pfam SBP domain 172 245 IPR004333 GO:0003677
Eupl04g01335 553 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Eupl04g01335 553 Coils Coil 521 541 - -
Eupl04g01335 553 MobiDBLite consensus disorder prediction 236 255 - -
Eupl04g01335 553 Gene3D - 164 233 IPR036893 GO:0003677|GO:0005634
Eupl04g01335 553 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 117 537 IPR044817 GO:0003677
Eupl04g01335 553 SUPERFAMILY SBT domain 170 250 IPR036893 GO:0003677|GO:0005634
Eupl04g01335 553 FunFam Squamosa promoter-binding-like protein 14 163 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01335 Eupl-Chr4 21274446 21283350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01335 1 308 SBP-box Gene Family AT1G69170 40.064 3.48e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Eupl04g01335 SBP 5.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01335 - - nnu:104597891 776.548