Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01278 ATGCGGTGCTTGTCTGCGATGAAAAGGCGTCGGCTCCGTAAAACCCTACTTTTTGCTCTTTTCCTCGATCTGTTATTTCTATTCTTGATTTTCCCTTTTGTTTCTGGTGGTGGTGGTGATGTTGATTCGGATAAATCGGTTCTACTTCAGTTCAAGAGCTCTGTTTCGGACCCTTCGGGGATTCTCTCCAGGTGGAATTCTAGCAGTTTCGATCACTGCTCTTGGTTCGGCGTCTTATGCGACTCGAAATCGAGGGTTTTGGCGCTCAATATAACTGGTGGTGGCGGCGGAGGTAATTCGGAAGCTCTTTCTTGTTCCGAATTTGCTCAATTTCCTTTATATGGGTTTGGAATTAGGAGGAGTTGTTTGGGAAATAACAGAAAGTTGGCGGGGAAACTGTCGCCGTTGATCGGAAAACTAACTGAGCTTAGGGTTTTATCTCTGCCGTTTAACGATTTTAATGGTGAAATTCCTGTTGAAATATGGGGTTTAGACAAGCTAGAAGTGCTTGATCTCGAAGGGAATTCACTTACTGGAACTTTGCCTCTTGAATTCGGGGGCTTGAGGATGTTACGCGTCCTTAATCTCGGTTTTAACAAGCTGGAAGGAGAGATTCCGGCCTCCCTTTCAAACTGTGTTGGTTTAGAGATGTTGAACTTGGCTGGTAACCGTGTAAACGGGACGATCCCTGGTTTTGTTGCTAAATTTTTGAAGTTGAAGGGCCTTTATTTGTCTCTTAACCAGCTGGGTGGGTCTGTTCCAGACGAGCTCGGAAACAACTGTCAGAGTCTCGAACATCTTGATCTTTCGGGGAATTTCTTTGTCAATGACATCCCAAATAGTTTGGGGAATTGCAGCCAACTTCGATCACTGTTGTTGTTTTCCAATATGTTGGAAAGCACTATTCCTCCTGAACTCGGTCGGCTTCAGAAGCTTGAGGTGTTAGATGTGTCAAGGAACAGCCTCAGTGGCCCTATACCTCCTAATCTTGGAAGATGTGTTGAATTGTCCGTTCTCATTTTCTCCAATATGTATGATCCGCTCGAACCCATTGGGACTCTGAGGGGGAACTCTTCGCCCCGGCTGCCTACTGCTGCTAATGATGATTTCAACTATTTTCAAGGCGGCATTCCAAGGGAAATTACAACCCTGCCAAAACTCAGGATATTTTGGGCACCAAGGGCAACTCTCGAAGGCAAGATTCCGGGTGATTGGGGTTCTTGTGAAAGCTTGGAAATGGTTAGCTTGGGTCAAAACCTTTTCACTGGAGAAATCCCAGAGGTGTTTAGACGCTGCAAGAATCTGCATTTTCTTAACTTGAGCACAAATAAGCTGACCGGGGAGCTCAATGGGAATCTTCCAGTTCCTTGTATGTCCGTGTTTGACGTAAGTGAGAACCTCTTATCAGGCTCCATTCCCATTTTTAATTACAGCATTTGCCCTCACATACCATCCTTGAATGCTTATCTTGTCGAACCCTACAGCCCATCATCTGCATATTCAGCATTTTTCGTATATAAAACTCAGATTGGAACACTCTTGCCATCTTTCGAAACCAGCGCCAGTTTTGGAATTATCCATAATTTTGGCGGTAATAACTTTACTGGTCCCCTCCTGTCCTTGCCAATTGCACCTGAAAGATTAGGGAAGCAGACTGCTTATGCATTTCTTGCTGGCAGAAATAAACTCAGTGGATCATTCCCTGAAAGTCTATTTGAGAAGTGTGATGGCTTGAACAGAATGATCGCTAATGTTAGCAACAACCAAATTTCCGGTCAAATTCCAGTGGATATTGGTTCAATGTGCAGAGCTCTTACACTTTTGGATGCCTCGGGGAACCAGATTACTGGATCAATGCCCCAAAGTTTTGGGGATTTGGAGTTTCTTGTGAGTCTTTACTTGAGTCAGAACAAATTGCAAGGTCAGATTCCAGTGGGTCTGGGCCGGTTACAAGGTCTGAAGTATCTCTCATTGGCTGCTAACAACCTGACTGGTGGCATCCCTTCCAGCTTGGGCCAGTTGCTCTCTCTGGAGGTGTTGGAACTTTCCTCAAACTCTCTCTCCAGTGAGATTCCAAAAGATCTGGTGAACTTGAGGAACCTTACTGTTTTGCTGCTCAACAACAATAAACTCTCGGGGCAGATCCCTTCCGGGTTGGCTAATCTGACGTCACTCTCTGCATTTAACGTGTCCTTCAATAACTTGTCTGGGCCTCTACCGTCGAACAATAATTTGACGAAATGCAGCAGTGTTCTTGGAAACCCTTTTCTTGCATCTTGCTCTGTCTCTCTATCCTTGCCACCTTCAGATATGCAAGCGAGGGATGGGGACCCACAAAATGTTGCAGCTTCATCATCGGGAAGTGTGACCCAGAAAAGTGGGAATAAAGGCTTCAATTCTATCGAGATCGCATCGATAACATCGGCATCAGCTGTTGTTTCGGTTCTGCTAGCTCTAGTTGTCCTTTTTCTGTACACAAGAAAATGCATCCCAAAGTCCAGGGTTGGAGGGTCCGGAAGAAGAAGGGAGGTTACAGTTTTCAGTGAAATTGGGGTTCCACTGACATTCGAGAATGTTGTCCGGGCCACAGGGAGTTTCAATGCAAGCAACTGCATTGGTAATGGAGGTTTTGGGGCCACTTACAAAGCTGAGATTTCTCCAGGAGTTCTGGTGGCGATAAAGAGGCTCTCAGTTGGACGGTTCCAAGGAGTTCAGCAATTCCATGCAGAGATCAAGACGCTTGGTAGGATGCGTCATCAAAATCTTGTGACTTTAATAGGTTACCATGCCAGCGAGACGGAGATGTTCCTCATCTATAATTACCTGCCGGGAGGTAATTTGGAAAAATTTATCCAGGAAAGGTCTGAGAGAGCTGTGGATTGGAGGATACTTCACAAGATTGCATTAGATATAGCCCGGGCACTTGCCTATCTGCATGACCAGTGTGTCCCACGGGTCCTACATCGTGATGTCAAGCCAAGCAATATCTTATTGGACAATGACTTCAATGCTTATCTTTCTGATTTCGGATTGGCCAGGCTTCTGGGTACTTCCGAAACCCATGCAACTACTGGTGTAGCAGGAACTTTTGGGTATGTAGCTCCGGAGTATGCAATGACTTGTCGTGTTTCTGACAAGGCCGATGTGTACAGTTATGGTGTGGTGCTGCTCGAGTTGATCTCAGATAAAAAAGCCTTGGATCCCTCGTTTTCTTCATATGGGAATGGTTTCAATATTGTTGCATGGGCATGCATGCTTCTGCGACAGGGTCGGGCAAAGGAGTTCTATACTGCAGGGCTATGGGATGCAGGCCCCCATGATGATTTGGTGGAGACGCTGCACTTGGCTGTTATGTGTACTGTTGAGTCCCTCTCGATCAGACCTACGATGAAGCAAGTTGTTCGACGGCTGAAGCAACTTCAACCCCCATCATGCTAG 3438 0.4587 MRCLSAMKRRRLRKTLLFALFLDLLFLFLIFPFVSGGGGDVDSDKSVLLQFKSSVSDPSGILSRWNSSSFDHCSWFGVLCDSKSRVLALNITGGGGGGNSEALSCSEFAQFPLYGFGIRRSCLGNNRKLAGKLSPLIGKLTELRVLSLPFNDFNGEIPVEIWGLDKLEVLDLEGNSLTGTLPLEFGGLRMLRVLNLGFNKLEGEIPASLSNCVGLEMLNLAGNRVNGTIPGFVAKFLKLKGLYLSLNQLGGSVPDELGNNCQSLEHLDLSGNFFVNDIPNSLGNCSQLRSLLLFSNMLESTIPPELGRLQKLEVLDVSRNSLSGPIPPNLGRCVELSVLIFSNMYDPLEPIGTLRGNSSPRLPTAANDDFNYFQGGIPREITTLPKLRIFWAPRATLEGKIPGDWGSCESLEMVSLGQNLFTGEIPEVFRRCKNLHFLNLSTNKLTGELNGNLPVPCMSVFDVSENLLSGSIPIFNYSICPHIPSLNAYLVEPYSPSSAYSAFFVYKTQIGTLLPSFETSASFGIIHNFGGNNFTGPLLSLPIAPERLGKQTAYAFLAGRNKLSGSFPESLFEKCDGLNRMIANVSNNQISGQIPVDIGSMCRALTLLDASGNQITGSMPQSFGDLEFLVSLYLSQNKLQGQIPVGLGRLQGLKYLSLAANNLTGGIPSSLGQLLSLEVLELSSNSLSSEIPKDLVNLRNLTVLLLNNNKLSGQIPSGLANLTSLSAFNVSFNNLSGPLPSNNNLTKCSSVLGNPFLASCSVSLSLPPSDMQARDGDPQNVAASSSGSVTQKSGNKGFNSIEIASITSASAVVSVLLALVVLFLYTRKCIPKSRVGGSGRRREVTVFSEIGVPLTFENVVRATGSFNASNCIGNGGFGATYKAEISPGVLVAIKRLSVGRFQGVQQFHAEIKTLGRMRHQNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSERAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDNDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFYTAGLWDAGPHDDLVETLHLAVMCTVESLSIRPTMKQVVRRLKQLQPPSC* 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01278 1145 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 287 1139 - -
Eupl04g01278 1145 Gene3D Ribonuclease Inhibitor 41 238 IPR032675 -
Eupl04g01278 1145 Gene3D Ribonuclease Inhibitor 365 491 IPR032675 -
Eupl04g01278 1145 Gene3D Ribonuclease Inhibitor 504 780 IPR032675 -
Eupl04g01278 1145 Gene3D Ribonuclease Inhibitor 239 345 IPR032675 -
Eupl04g01278 1145 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Eupl04g01278 1145 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 258 349 - -
Eupl04g01278 1145 SMART LRR_typ_2 626 650 IPR003591 -
Eupl04g01278 1145 SMART LRR_typ_2 261 285 IPR003591 -
Eupl04g01278 1145 SMART LRR_typ_2 309 333 IPR003591 -
Eupl04g01278 1145 SMART LRR_typ_2 236 260 IPR003591 -
Eupl04g01278 1145 SMART LRR_typ_2 164 187 IPR003591 -
Eupl04g01278 1145 SMART LRR_typ_2 188 212 IPR003591 -
Eupl04g01278 1145 SMART LRR_typ_2 674 697 IPR003591 -
Eupl04g01278 1145 SMART LRR_typ_2 698 722 IPR003591 -
Eupl04g01278 1145 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 829 941 - -
Eupl04g01278 1145 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 942 1144 - -
Eupl04g01278 1145 SUPERFAMILY Protein kinase-like (PK-like) 846 1137 IPR011009 -
Eupl04g01278 1145 Gene3D Phosphorylase Kinase; domain 1 832 941 - -
Eupl04g01278 1145 ProSiteProfiles Protein kinase domain profile. 866 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01278 1145 MobiDBLite consensus disorder prediction 778 793 - -
Eupl04g01278 1145 Pfam Leucine rich repeat 167 224 IPR001611 GO:0005515
Eupl04g01278 1145 Pfam Leucine rich repeat 652 711 IPR001611 GO:0005515
Eupl04g01278 1145 CDD STKc_IRAK 872 1140 - -
Eupl04g01278 1145 Pfam Protein kinase domain 869 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01278 1145 SUPERFAMILY L domain-like 43 344 - -
Eupl04g01278 1145 ProSitePatterns Protein kinases ATP-binding region signature. 872 894 IPR017441 GO:0005524
Eupl04g01278 1145 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 522 765 - -
Eupl04g01278 1145 MobiDBLite consensus disorder prediction 769 793 - -
Eupl04g01278 1145 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 369 449 - -
Eupl04g01278 1145 SUPERFAMILY L domain-like 373 750 - -
Eupl04g01278 1145 ProSitePatterns Serine/Threonine protein kinases active-site signature. 986 998 IPR008271 GO:0004672|GO:0006468
Eupl04g01278 1145 Pfam Leucine Rich Repeat 263 285 IPR001611 GO:0005515
Eupl04g01278 1145 Pfam Leucine Rich Repeat 311 332 IPR001611 GO:0005515
Eupl04g01278 1145 SMART serkin_6 866 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01278 1145 Gene3D Transferase(Phosphotransferase) domain 1 942 1142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01278 Eupl-Chr4 19777265 19782674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01278 23 1145 Receptor kinase-like Gene Family AT3G02130 66.025 0.0 1399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Eupl04g01278 Pkinase 8.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01278 - - nnu:104597937 1629.77