Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01277 ATGGCGAAATCCATAACTCCAGATGCCATTTCGACCATAACCGCAAACCCTTCTCCCGATTCTTCCTCTGAAATCCCAGAACTCGTTGTTCAAGTCGTCAATCTCAAGCCGGTCGGCAACAGATTTACATTTATAGCTAGTGATGGAAGTATGAAGCTCAGGGCAACACTTCCGTCCAGTTTGTCGTCGGAGATTAGCTTGGGAAATCTTGAGAACCTTGGGCTCATCCGTATTCTTGATTACACCCTCAACGTTATTCCAAAGACGCTTGAAAAGTGTCTAATTGTGACCAAATGTGAGGTGGTATCTCCTGTGCTTGAAATGGAGATAGTGACTGAAGTTAAAAAAGAGGAAGCTGGAATTATGTTGAAGCCGAAGCAAGAAATTGGAATTATATTGAAGCCTAAGCAAGAAATGGTTGCTAAATCTGCTGCTCAGATTGTGCATGAACAGCATGTGAATATGGCTCCTGCTGCTCGAATGTCGATGACAAGAAGGGTTTATCCTCTTGTTTCCTTAAACCCTTACCAAGGCAACTGGACTATAAAGGTTCGGGTCACAAATAAAGGCAACTTACGGACCTACAAGAATGCTAGAGGAGAAGGCAATGTCTTTAATGTTGAATTAACTGACCAGGATGGAACACAAATACAAGCGACAATGTTTAATGAAGCTGCACTTAAGTTCTATGATAAGTTTCAATTGGGAAAGGTTTATTACATATCCAGAGGAACACTAAAAGTTGCTAACAAGCAGTATAAAACTGTCCAAAATGATTATGAGATGACCTTAAATGAGAACTCTGAAGTGGAGGAGGCAACTGGTGAAGAAACTTTTATACCTGAAACAAAATTCAACTTTGTCCAGATTGATCAATTGGGTTCCTATGTTAATGGAAGGGAGCTTGTAGATATAATTGGGGTTGTTCAGAATGTCTCACCTACTTTGAGTATTCGAAGGAAGAGTAATAATGACATTATCCCAAAACGTGATATAACAATTGCAGATGAGTCGAAAAAGACTGTTGTAGTATCTTTGTGGAATGATCTTGCCACCAGTATAGGACAAGAATTGCTGGATATGGTTGAAACTTCTCCTATTGTAGCAATAAAATCGCTTAAAGTTGGAGATTTCCAAGGAGTTTCTCTGTCATCTTTGGGTAAAAGTGCTGTGGTGGTAAATCCAGACATACCTGAATCAAAGAGGCTAAGAACCTGGTATAATTCTGAAGGTAAAGGGACTTCAATGGCTTCTGTTGGCTCTGGTTTGATCTCCACTTCATCTATGAGTGGAGTGAGATCTATGTACTCTGACCGAATCTTCCTTTCTCATATTACCAGTAACCCATCCTTGGGCGAGGACAAGCCCGAATTTTTCAGCATAAAAGCATCTGTGACTTACATCAAGCCTGATCAGACAATGTGGTACCGGGCATGCAAGCAATGCAACAAGAAAGTTACAGAAGCAGTTGGATCTGGGTATTGGTGTGAAGGGTGCCAGAAGAATGATGATGAGAGCAGCTTAAGATATATATTGGTAGTGAAAGTTTCCGATCCAAGTGGTGAAGCTTGGCTTTCTATTTTCAATGATCAAGCAGAGAAAATTATTGGGTGCTCTGCAGATGAGCTTGATAATTTGAAATCACAGGGAGATGATAAAGCTTACCAATTAAAACTGAAAGAAGCTACATGGGTTCCTCATCTATTTCGAGTTAGTGTCGCACAGAATGAGTACATGAATGAGAAAAGGCAGAGGATAACAGTCAGAGCTCTGGCTCCACTTGATTTTGCAGCGGAATCAAGATTTCTACTTGAAGAGATGTCCAAGATGCAAGCCTCTTAA 1842 0.4061 MAKSITPDAISTITANPSPDSSSEIPELVVQVVNLKPVGNRFTFIASDGSMKLRATLPSSLSSEISLGNLENLGLIRILDYTLNVIPKTLEKCLIVTKCEVVSPVLEMEIVTEVKKEEAGIMLKPKQEIGIILKPKQEMVAKSAAQIVHEQHVNMAPAARMSMTRRVYPLVSLNPYQGNWTIKVRVTNKGNLRTYKNARGEGNVFNVELTDQDGTQIQATMFNEAALKFYDKFQLGKVYYISRGTLKVANKQYKTVQNDYEMTLNENSEVEEATGEETFIPETKFNFVQIDQLGSYVNGRELVDIIGVVQNVSPTLSIRRKSNNDIIPKRDITIADESKKTVVVSLWNDLATSIGQELLDMVETSPIVAIKSLKVGDFQGVSLSSLGKSAVVVNPDIPESKRLRTWYNSEGKGTSMASVGSGLISTSSMSGVRSMYSDRIFLSHITSNPSLGEDKPEFFSIKASVTYIKPDQTMWYRACKQCNKKVTEAVGSGYWCEGCQKNDDESSLRYILVVKVSDPSGEAWLSIFNDQAEKIIGCSADELDNLKSQGDDKAYQLKLKEATWVPHLFRVSVAQNEYMNEKRQRITVRALAPLDFAAESRFLLEEMSKMQAS* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01277 613 SUPERFAMILY Nucleic acid-binding proteins 167 275 IPR012340 -
Eupl04g01277 613 SUPERFAMILY Nucleic acid-binding proteins 285 412 IPR012340 -
Eupl04g01277 613 Gene3D - 166 275 IPR012340 -
Eupl04g01277 613 Pfam Replication factor-A C terminal domain 458 603 IPR013955 -
Eupl04g01277 613 CDD RPA1_DBD_C 441 609 IPR047192 -
Eupl04g01277 613 PANTHER REPLICATION FACTOR A 1, RFA1 180 573 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Eupl04g01277 613 SUPERFAMILY Nucleic acid-binding proteins 437 610 IPR012340 -
Eupl04g01277 613 NCBIfam replication factor-a protein 1 (rpa1) 3 609 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Eupl04g01277 613 Coils Coil 246 266 - -
Eupl04g01277 613 FunFam Replication protein A subunit 166 275 - -
Eupl04g01277 613 CDD RPA1_DBD_A 169 272 - -
Eupl04g01277 613 Gene3D - 423 610 IPR012340 -
Eupl04g01277 613 FunFam Replication protein A subunit 279 418 - -
Eupl04g01277 613 MobiDBLite consensus disorder prediction 1 21 - -
Eupl04g01277 613 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Eupl04g01277 613 SUPERFAMILY Nucleic acid-binding proteins 1 107 IPR012340 -
Eupl04g01277 613 FunFam Replication protein A subunit 4 114 - -
Eupl04g01277 613 FunFam Replication protein A subunit 424 610 - -
Eupl04g01277 613 Pfam OB-fold nucleic acid binding domain 180 265 IPR004365 GO:0003676
Eupl04g01277 613 Gene3D - 280 420 IPR012340 -
Eupl04g01277 613 CDD RPA1_DBD_B 302 408 - -
Eupl04g01277 613 Gene3D - 4 113 IPR012340 -
Eupl04g01277 613 Pfam Replication protein A OB domain 298 394 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01277 Eupl-Chr4 19770032 19774581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01277 1 613 Core DNA Replication Machinery Family AT5G08020 67.805 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01277 K07466 - nnu:104597938 988.793