Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01271 ATGGCTTTCATTAGTAAACTCGGGAATCTACTAAAGCAGAGCGTAAGCAAGCACATCAATTCTGAATTGTCTGCATCCAAGCCATCTATGTTGCAAGCAATAAGATGCATGTCGTCGTCCAAACTCTTCATTGGAGGTCTATCATATAACACCGATGACACAAGTCTGAGAGAAGCTTTCACTTCGTATGGGGAAGTTATTGAAGCAAGAGTTATCATGGATCGTGAGACGGGTAGATCCAGAGGCTTTGGTTTTGTTAGTTTCACATCTAGTGAGGAGGCCTCTTCTGCCATTCAAGCTATGGATGGAAAGGATCTTCATGGTCGAATGGTAAGGGTGAATTATGCAACGGATCGGGCAGGAGGATTCCGTAGTGGTGGTGGTGGCGGCTACGGTGGTGGCGGCTACGGTGGTGGTGGTGGTGGCTACGGTGGCGGCGGTTATGGAGGTGGAGGGGGCAACTATGGTGGAGCTGGAGGCGGTGGTTATGGTGGTGATAGTTATGGAAGTGGAGGTGGTGGTGGCAATTACGGTGGTGGTGGAGGTTTTGGTGCCACAAGTGGTTATGATGGTGGAAGCGGTGGTGGTGGCAGCTACGGCAGTGGTGGTAGTTATGGTGGTGGAAGTGGTTATGATGGTGGAAGCAGTGGAGGTTATGGTGGCAGCAGCAGTGGAAATTTTAGTGTTGCTGGTGGTGGCAGTGATAGCTATGTTAGCGGTGGTGCTGGTGCTGGTGGTGACAGTAGCCATGCAAGTGGCGGTTATGGTGGGAGCACTGGAATGTCGTATGGCAGCACCAATCAATTCGCCAGTGACCAAGTTGGTAGCACGGCTGCTGAGGGTTATGACCGGGACGATTCGATGGAAGGAAACTTAAAGGACGATGCTGATGAACCTGATGACTTCGCCAACAAGAGGGGTTGA 924 0.5097 MAFISKLGNLLKQSVSKHINSELSASKPSMLQAIRCMSSSKLFIGGLSYNTDDTSLREAFTSYGEVIEARVIMDRETGRSRGFGFVSFTSSEEASSAIQAMDGKDLHGRMVRVNYATDRAGGFRSGGGGGYGGGGYGGGGGGYGGGGYGGGGGNYGGAGGGGYGGDSYGSGGGGGNYGGGGGFGATSGYDGGSGGGGSYGSGGSYGGGSGYDGGSSGGYGGSSSGNFSVAGGGSDSYVSGGAGAGGDSSHASGGYGGSTGMSYGSTNQFASDQVGSTAAEGYDRDDSMEGNLKDDADEPDDFANKRG* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01271 307 PRINTS Eggshell protein signature 163 173 - -
Eupl04g01271 307 PRINTS Eggshell protein signature 206 224 - -
Eupl04g01271 307 PRINTS Eggshell protein signature 36 52 - -
Eupl04g01271 307 PRINTS Eggshell protein signature 138 153 - -
Eupl04g01271 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 110 IPR000504 GO:0003723
Eupl04g01271 307 MobiDBLite consensus disorder prediction 238 307 - -
Eupl04g01271 307 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 143 - -
Eupl04g01271 307 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 15 218 - -
Eupl04g01271 307 MobiDBLite consensus disorder prediction 282 307 - -
Eupl04g01271 307 Gene3D - 11 137 IPR012677 -
Eupl04g01271 307 SMART rrm1_1 41 114 IPR000504 GO:0003723
Eupl04g01271 307 MobiDBLite consensus disorder prediction 252 275 - -
Eupl04g01271 307 SUPERFAMILY RNA-binding domain, RBD 26 132 IPR035979 GO:0003676
Eupl04g01271 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Eupl04g01271 307 CDD RRM2_NsCP33_like 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01271 Eupl-Chr4 19697760 19702773 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01271 38 185 Eukaryotic Initiation Factors Gene Family AT4G34110 26.708 2.87e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01271 K12741 - ming:122078291 210.69