Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01260 ATGGCGATGGCTGCGCTCAGACGGGAAGGAAGGCGTTTCGGCCCTCTGATCTCTCCAAATTCAATCAATGCCGCTCGATCCTCACTCATTTCCGAGGAGTTGGCCCCTCAGGGAGCACGTTCTATTTCAACTCAAGTAGTCAGAAATCGGATGAAGAGTGTCAAGAACATTCAGAAAATCACAAAGGCAATGAAAATGGTGGCAGCCTCAAAGCTAAGAGCAATTCAAACTAGAGCAGAAAATTCACGTGGCCTGTGGCAGCCATTTACCGCACTTCTTGGAGATACTCCTAGCGTTGATGTGAAGAAGAATGTTATTGTCACTATTTCCTCTGACAAAGGTCTTTGCGGTGGAATCAATTCCACGTCAGTCAAGACAAGCAAGGCTATTCACAAGTTGACTTCTGGTCCTGATAAAGAAGCAAAGTATGTTGTTTTGGGAGAGAAGGCAAAGGCTCAACTTGTTCGTGACTCTAGGAAATACATTGAGATATCCATTACTGAGTTGCAGAAGAATCCTCTGAATTATACTCAGGTTTCTGTTCTTGCAGATGACATCTTAAAGAATGTTGAGTATGATGCTTTGAGGATTGTTTTCAACAAATTCCAATCAGTTGTCTCATTTTTGCCGACTGTGGCTACTGTTTTATCTCCCGAGGTTGTGGAGAGAGAGGCTGAAGCTGGGGGAAAGCTTGGTGATTTGGATTCATATGAAATTGAAGGTGGTGAGACAAAAGCAGAGGTGCTTCAGAATCTAGCGGAGTTTCAGTTTTCTTGTATTATGTTCAATGCAGTCTTGGAGAACGCATGCAGTGAGCAGGGGGCAAGGATGTCTGCTATGGATAGCTCCAGCAGAAATGCTGGAGACATGCTTGATCGCCTCACGCTTACGTACAACAGGTCCCTCTCTCTTGTCTCTCTATCTCATACACATGCGCGCGCACACACACACACACATGCATGCAAGCACACATACACACAGGCACCTTGTGTCACATCACCCTTATGTAGAGAAGGGTGA 1020 0.4529 MAMAALRREGRRFGPLISPNSINAARSSLISEELAPQGARSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIVTISSDKGLCGGINSTSVKTSKAIHKLTSGPDKEAKYVVLGEKAKAQLVRDSRKYIEISITELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFQSVVSFLPTVATVLSPEVVEREAEAGGKLGDLDSYEIEGGETKAEVLQNLAEFQFSCIMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRSLSLVSLSHTHARAHTHTHACKHTYTQAPCVTSPLCREG* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01260 339 Gene3D ATP synthase, gamma subunit, helix hairpin domain 47 300 - -
Eupl04g01260 339 PANTHER ATP SYNTHASE GAMMA CHAIN 28 301 IPR000131 GO:0015986|GO:0045261|GO:0046933
Eupl04g01260 339 FunFam ATP synthase subunit gamma 67 279 - -
Eupl04g01260 339 PIRSF ATP_synthase_gamma 11 302 - -
Eupl04g01260 339 PRINTS ATP synthase gamma subunit signature 193 210 IPR000131 GO:0015986|GO:0045261|GO:0046933
Eupl04g01260 339 PRINTS ATP synthase gamma subunit signature 267 286 IPR000131 GO:0015986|GO:0045261|GO:0046933
Eupl04g01260 339 PRINTS ATP synthase gamma subunit signature 101 120 IPR000131 GO:0015986|GO:0045261|GO:0046933
Eupl04g01260 339 Gene3D - 67 279 - -
Eupl04g01260 339 Pfam ATP synthase 45 300 IPR000131 GO:0015986|GO:0045261|GO:0046933
Eupl04g01260 339 NCBIfam ATP synthase F1 subunit gamma 43 301 IPR000131 GO:0015986|GO:0045261|GO:0046933
Eupl04g01260 339 CDD F1-ATPase_gamma 43 301 IPR000131 GO:0015986|GO:0045261|GO:0046933
Eupl04g01260 339 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 44 300 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01260 Eupl-Chr4 19515771 19533273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01260 12 301 Primary Pumps ATPases AT1G15700 27.697 1.07e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01260 K02136 - nnu:104597951 535.028