Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01256 ATGGCGTCGGAGAAGAGATGCCTCTACGAAATTCTAGGGTTGAGCAGAGACTGCTCTGCTGACGAAATTCGATCTGCGTACAAGAAATTAGCTCTTCAGCGCCACCCCGACAAGCTCATCCAGACCGGAATCCCCGAAGAACAAGCCACTGCTGCGTTTCAAGAGCTCGTCAACGCCTACGAAGTCCTTTCCGATCCACGCGAACGGGCCTGGTACGACTCTCATCGATCCCAGATCCTCTTCTCTGATGCAAACTCATCTGGCGCGTCGTCGATCCCCGACCTTTTCTCGTTCTTCTCAAATTCCGTTTTTTCAGGGTTTGGTGACACCGGAAAGGGTTTTTACAAGGTTTATGGTGATTTATTCGGTAAAATTTACGGTCAGGAGGTTTTGTTCTCGAAGAAGCTAGGGCTAGGCGCTGGTACGGTTAGGGACGCACCATTGATGGGGAATTTAGAGAGCCCTTATGCGCAAGTTACCGCTTTTTATAATTATTGGTTAGGGTTTTGTACGGTGCTGGATTTTTGTTGGGTTGATGAGTACGATGCGATGGCTGGGCCGAACCGGAAGTCGCGAAGGCTCATGGAGGAGGAGAATAAGAAGTTGAGGAAGAAAGCAAGGAAGGAGTACAACGAGACAGTTCGTGGGTTGGCAGAGTTCGTGAAAAAGAGGGACAAACGGGTTATCGAGATGCAGATGAAGAGGATTTTGGAGCAGGAGAAGAAGAGGGAAGAGGAGAAAGCTCGGAAGAAAGAAGCGGATAGAGCAAAGTTAGAGAAAGCAAGGCTGTATGAAGAGCCTGACTGGGCGAAAGTTGATGAGGAAATTGAGAATGGGTTCGATGAAGATGAGGACGATAAGAAGAAGAATAATGGTAAGGAGTTATACTGTGTTGTATGTAGTAAGAAGTTTAAGTCCGATAAGCAGTGGAAGAATCACGAGCAGTCCAAGAAGCACCGTGAGAAGGTGGCAGAGCTGAGGGATTCATTTGGCACTGAAGAAGAGGAGGAAGAAGACGATGTGAAGGATGATGAACTGTTAGCTAGTGATGTGGATGTAACCCATGCGGAAGAGGAGGATGTTGTGAGTGAGTTGCGGGAGCAATTCGAAGATAGTTTTCGCTTTCGGGAAGAACAAAGTGAGAATAAAAATCCTTCTGATGCTAATAATGGGGATGAGGGCAGTGATGAAGGAGGAATCGAGGTGTCTGATGCTAATAATGGGGATGATGGCAGTGATGCATTTGGCACGGATGAGGAAACGAGCGTTCTCAAAGCTATGGTGTCCGGGCACAAGGGCAGAAAGAACGCAGCCTCAATGCAACAATCCAAATCTTTTTCTAGCAAATATCATGTTAGCGCTGATGGTGAAGAGATGGACTTTATGGAATATGATAGCCGGAAAAGCACTCGTAGGAATCAGGCTGCGAAGAGAGAGGGTGGCAGGAAATCTAATGGAGAAGCTGTGAGAGCAGAGATGGGTGAAGTAACTGAGGCAGTAATTTCTAGTTGTAATGGCAATAATGTTTGGGGTGAGGAAGATGGTGGACATGATAATTCACATGTGCAGGATTCATCGTCGCATACGCTTGAGGAGACTGAACCTAAGATTAGAAGGGATCCGCCATTGGACAAAGATCGTAAGGTTCTAAACCAGCCAATTGATAAAAAAGGGTACCGGAAAGAGAGATACAAACACCAAATCAAAAAACACGTCCAAGGGAAAGAAACAGAAGAGTATGAACATGATGAGGACATCAGGACGTCCCCTGGAGTGTACCAAAGGAGCAAAACTGGGTCCATACCCTTGTCATTGTACTTTGATGATTTCTATGTGGGCCCCAATTCGAGTTCTTCTTAA 1860 0.4651 MASEKRCLYEILGLSRDCSADEIRSAYKKLALQRHPDKLIQTGIPEEQATAAFQELVNAYEVLSDPRERAWYDSHRSQILFSDANSSGASSIPDLFSFFSNSVFSGFGDTGKGFYKVYGDLFGKIYGQEVLFSKKLGLGAGTVRDAPLMGNLESPYAQVTAFYNYWLGFCTVLDFCWVDEYDAMAGPNRKSRRLMEEENKKLRKKARKEYNETVRGLAEFVKKRDKRVIEMQMKRILEQEKKREEEKARKKEADRAKLEKARLYEEPDWAKVDEEIENGFDEDEDDKKKNNGKELYCVVCSKKFKSDKQWKNHEQSKKHREKVAELRDSFGTEEEEEEDDVKDDELLASDVDVTHAEEEDVVSELREQFEDSFRFREEQSENKNPSDANNGDEGSDEGGIEVSDANNGDDGSDAFGTDEETSVLKAMVSGHKGRKNAASMQQSKSFSSKYHVSADGEEMDFMEYDSRKSTRRNQAAKREGGRKSNGEAVRAEMGEVTEAVISSCNGNNVWGEEDGGHDNSHVQDSSSHTLEETEPKIRRDPPLDKDRKVLNQPIDKKGYRKERYKHQIKKHVQGKETEEYEHDEDIRTSPGVYQRSKTGSIPLSLYFDDFYVGPNSSSS* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01256 619 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676|GO:0008270
Eupl04g01256 619 SUPERFAMILY Chaperone J-domain 3 111 IPR036869 -
Eupl04g01256 619 MobiDBLite consensus disorder prediction 347 383 - -
Eupl04g01256 619 Coils Coil 229 261 - -
Eupl04g01256 619 MobiDBLite consensus disorder prediction 306 329 - -
Eupl04g01256 619 MobiDBLite consensus disorder prediction 514 561 - -
Eupl04g01256 619 Pfam DnaJ domain 8 73 IPR001623 -
Eupl04g01256 619 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Eupl04g01256 619 MobiDBLite consensus disorder prediction 306 597 - -
Eupl04g01256 619 MobiDBLite consensus disorder prediction 451 489 - -
Eupl04g01256 619 SMART dnaj_3 6 68 IPR001623 -
Eupl04g01256 619 Gene3D DnaJ domain 4 130 IPR036869 -
Eupl04g01256 619 MobiDBLite consensus disorder prediction 435 450 - -
Eupl04g01256 619 SUPERFAMILY beta-beta-alpha zinc fingers 284 337 IPR036236 -
Eupl04g01256 619 Coils Coil 192 212 - -
Eupl04g01256 619 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
Eupl04g01256 619 CDD DnaJ 7 65 IPR001623 -
Eupl04g01256 619 Pfam Zinc-finger double-stranded RNA-binding 295 320 IPR022755 -
Eupl04g01256 619 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Eupl04g01256 619 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 581 IPR044648 -
Eupl04g01256 619 PRINTS DnaJ domain signature 48 68 IPR001623 -
Eupl04g01256 619 PRINTS DnaJ domain signature 27 42 IPR001623 -
Eupl04g01256 619 PRINTS DnaJ domain signature 9 27 IPR001623 -
Eupl04g01256 619 MobiDBLite consensus disorder prediction 569 590 - -
Eupl04g01256 619 MobiDBLite consensus disorder prediction 330 346 - -
Eupl04g01256 619 Gene3D Classic Zinc Finger 281 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01256 Eupl-Chr4 19476356 19479436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01256 3 486 C2H2 Transcription Factor Family AT1G74250 54.858 2.34e-160 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01256 K09506 - nnu:104599144 713.761