Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01229 ATGGAGACTGCGAGAACGGTGAAAGACGTTTCACCTCATGAGTTCGTGAAGGCGTACTCAGCTCACCTCAAGCGATCGGGGAAGATGGAGCTTCCTCACTGGAATGATATTGTGAAGACGGCTAGATTCAAGGAGCTTGCTCCATATGATCCGGATTGGTACTATGTTAGAGCTGCTTCCATGGCTAGGAAGATTTACTTGAGGCAGGGTATTGGGGTTGGTGGTTTCCGGAAGATCTACGGTGGGAGCCAGAGGAATGGGAGTCGCCCACCCCATTTCTGCAAGAGCAGTGGTGCAGTTGCTCGTCACATCCTTCAACAGCTGCAGAAGATGAACATTATTGACATTGACCCTAAGGGTGGGAGGAGAATCACGTCCAGCGGCCAGCGGGATCTTGACCAAGTTGCCGGGCGGACCGTGGTTGCTCCTTGA 432 0.5255 METARTVKDVSPHEFVKAYSAHLKRSGKMELPHWNDIVKTARFKELAPYDPDWYYVRAASMARKIYLRQGIGVGGFRKIYGGSQRNGSRPPHFCKSSGAVARHILQQLQKMNIIDIDPKGGRRITSSGQRDLDQVAGRTVVAP* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01229 143 PANTHER 40S RIBOSOMAL PROTEIN S19 2 139 IPR001266 GO:0003735|GO:0005840|GO:0006412
Eupl04g01229 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Eupl04g01229 143 FunFam 40S ribosomal protein S19 2 143 - -
Eupl04g01229 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Eupl04g01229 143 Gene3D - 1 141 IPR036388 -
Eupl04g01229 143 Pfam Ribosomal protein S19e 6 139 IPR001266 GO:0003735|GO:0005840|GO:0006412
Eupl04g01229 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 140 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01229 Eupl-Chr4 18721122 18723717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01229 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 81.690 4.05e-89 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01229 K02966 - nnu:104597979 280.411