Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01221 ATGGAAGAAGATCAAGAACTGAAGCATGTATGCAAGTTCTGCAAGAAGAGTTTCCCCTGTGGGAGGTCCTTGGGAGGTCACATGAGGTCTCATATGACCAATACTTCATCTGTAACAAGGGAGAAGCTCAGCAAGAAGAAGGTCTCTTCTTCTGTTAATGGTGGAAGCAATAGTAAAAACACCTACATGATGGGTTTTGAAGCTGCTGGTCATGCTGGTTATGGGCTTAGAGAGAACCCCAAGAAGACTTGGAGGTTGTCAGATTGTATCGACGGTTCTTTGCGGGAGGGGAAATTCTGTAAAGAATGTGGTAAAGAGTTTCAGTCATGGAAAGCTCTCTTTGGTCACATGAGGTGTCACTCGGAGAGAGAGATGGTTTCCCATAGCTTGGAGGATGATCCATGGACTAGTGGAAATCAGAAGCTGGTCATGGACAGCCAATCCGACAACGAAGCTGCGGCTCCGAGGCGGAGGAGGAGATCAAGAAGAACAAGGTACAAGACTACTACTACTACCGCTACTAGTACTTCTTCTTTCTCTTATGCAAATGCTTCTCCTTCTGTTTCTGAGATTGAGCAAGAACAGGAAGAAGTAGCTATGTGTTTGATGATGTTGTCTAGGGATGTGGGGTACTGGGGTGGGTTGAATTCTGTTGTGGAGTCTTCGGATAATAATTCTGTGGTTTTTGAAGTTAGATCATCAGGTCTAGTTAAGAAAATTTCTGAAAAAGAAGGTGGAAATTTTATCTGTAATGGTGATCAGACTGTGAAGATGAAGAAACCAAGAGATAAGAAGTTGGAATTTTGTGTTTCAGACTCCGAAAATGTTCGATTTGAGAGGAAAATATCTGAATTTGTTGGTTCTGATTCTGGGTTTCTGAGAAATGGGTTCAAGAAGGTGGAATCGGAAGTTTCTGTTGATGGGTTTACTTGGGTAGATGATTTTAAGAAGTCTAAGCTGGAGGATGAAGCTGGATTTGAGGTGTCTGATGTTGAATTGGGGAAGGGCTTTCATAATAAAAACAGAGTCAAGTGTACTGAAGTTGAATTGGGGAAGAATTTGATCAAAGAAGCCGACGATCAAGCTGATTCGCAGTGTAGGAAGTATTGTTCAAGCAAGAGAACTAGATATGATGCAAATTCTGAACTGGGGGGAGATCCCTCAAAGAAAAAATACGATGCTTCAGATTCTGAAATTGGCAAGGATTCTCCAAAGAAAAGCAAATATGAGTGCGCGACCTGCAACAAGATCTTCCACTCTTACCAGGCTCTTGGGGGTCACAGGGCTAGCCACAAGAAGGTCAGAGGCTGCTTTGCGTCGAAAATTGAGAGCGGTGAGAACAGCGTTGAGACCGAAGCTTCTCCTGATCCTACAGCTGATAGTAAGCTCATCAAATCTTGCAGTAATAGGAGCCCAATTGAGGGGCTGGGGGCTGGCAGCACCGAAACTAGCAGGTTGAAGAAGAGTAAGCATCAGTGTCCAATCTGCCTCAAAGTTTTTGCATCAGGGCAAGCTTTGGGTGGCCACAAGAGGTCCCATATGGTTGAGGGCTCTGAAGCAAGAGGCAATCAGACCATTGTAATTCAGCAACAGCTCCCTGAGCTTCGCGATCTTCTCGATCTTAATCTCCCTGCTCCTAGTGAGGAAGAAACCAATGGCCACATTGGGTTTAAGCCATGGTGGGTTGGAAGCAACCATAAGCACGAGCCGCCAGTGGGTCTGATATCTAACTGA 1734 0.4469 MEEDQELKHVCKFCKKSFPCGRSLGGHMRSHMTNTSSVTREKLSKKKVSSSVNGGSNSKNTYMMGFEAAGHAGYGLRENPKKTWRLSDCIDGSLREGKFCKECGKEFQSWKALFGHMRCHSEREMVSHSLEDDPWTSGNQKLVMDSQSDNEAAAPRRRRRSRRTRYKTTTTTATSTSSFSYANASPSVSEIEQEQEEVAMCLMMLSRDVGYWGGLNSVVESSDNNSVVFEVRSSGLVKKISEKEGGNFICNGDQTVKMKKPRDKKLEFCVSDSENVRFERKISEFVGSDSGFLRNGFKKVESEVSVDGFTWVDDFKKSKLEDEAGFEVSDVELGKGFHNKNRVKCTEVELGKNLIKEADDQADSQCRKYCSSKRTRYDANSELGGDPSKKKYDASDSEIGKDSPKKSKYECATCNKIFHSYQALGGHRASHKKVRGCFASKIESGENSVETEASPDPTADSKLIKSCSNRSPIEGLGAGSTETSRLKKSKHQCPICLKVFASGQALGGHKRSHMVEGSEARGNQTIVIQQQLPELRDLLDLNLPAPSEEETNGHIGFKPWWVGSNHKHEPPVGLISN* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01221 577 SMART c2h2final6 9 31 IPR013087 -
Eupl04g01221 577 SMART c2h2final6 491 513 IPR013087 -
Eupl04g01221 577 SMART c2h2final6 98 120 IPR013087 -
Eupl04g01221 577 SMART c2h2final6 409 431 IPR013087 -
Eupl04g01221 577 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Eupl04g01221 577 MobiDBLite consensus disorder prediction 132 147 - -
Eupl04g01221 577 MobiDBLite consensus disorder prediction 445 465 - -
Eupl04g01221 577 ProSiteProfiles Zinc finger C2H2 type domain profile. 491 518 IPR013087 -
Eupl04g01221 577 ProSiteProfiles Zinc finger C2H2 type domain profile. 409 436 IPR013087 -
Eupl04g01221 577 SUPERFAMILY beta-beta-alpha zinc fingers 6 34 IPR036236 -
Eupl04g01221 577 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Eupl04g01221 577 SUPERFAMILY beta-beta-alpha zinc fingers 99 124 IPR036236 -
Eupl04g01221 577 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Eupl04g01221 577 Gene3D Classic Zinc Finger 1 125 - -
Eupl04g01221 577 MobiDBLite consensus disorder prediction 377 406 - -
Eupl04g01221 577 SUPERFAMILY beta-beta-alpha zinc fingers 409 513 IPR036236 -
Eupl04g01221 577 ProSitePatterns Zinc finger C2H2 type domain signature. 493 513 IPR013087 -
Eupl04g01221 577 MobiDBLite consensus disorder prediction 130 186 - -
Eupl04g01221 577 Pfam C2H2-type zinc finger 9 32 - -
Eupl04g01221 577 Pfam C2H2-type zinc finger 100 121 - -
Eupl04g01221 577 Pfam C2H2-type zinc finger 409 433 - -
Eupl04g01221 577 Pfam C2H2-type zinc finger 491 514 - -
Eupl04g01221 577 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Eupl04g01221 577 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 561 - -
Eupl04g01221 577 ProSitePatterns Zinc finger C2H2 type domain signature. 411 431 IPR013087 -
Eupl04g01221 577 MobiDBLite consensus disorder prediction 167 186 - -
Eupl04g01221 577 Gene3D Classic Zinc Finger 406 513 - -
Eupl04g01221 577 MobiDBLite consensus disorder prediction 29 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01221 Eupl-Chr4 18599631 18601984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01221 1 549 C2H2 Transcription Factor Family AT1G26610 36.861 5.54e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl04g01221 zf-C2H2_6 1.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01221 - - nnu:104597985 725.702