Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01219 ATGGATTTCAGCAGATGGACTGAAATACAACAACACCCACAAAACCCTAACCCTTCAACGGACCCATACACCCAATTCTATAATGCGCAACAGTCTTCCTACGCCCATTACCCTTACTATCCCGCTCACCAACCCCAAATCCCTAACCCTAACGCAGCTCTAAAACACCATGAAATCCCATCTACCCAATTTGAACCCAGTCCTGACGTCAGTCTCCGGCCGCCTGGCATCGATTCGTATGCGGCCGTGAACTCCTACCACCCTCCCCATGTGGGTTTCGAAGCACAGGCGGCTGTGGCGTACAGTCTCCAACCGGCGCAGATGGGTGCGTTGTCCGCGGCGACATATTATCAGGACCCGAACATTGCACATAATTTTGCGGTAAAGGAGGCGATTCGGCACTACGGAGCTAATCCTGTTGGTTATGTACCTGGAACAAGTCCAACTCCCGTGTTCTTGAACAACAAGTGGATTAATATTCCTTTAGCCAATGGTGCCATAAAGAGGAAACTAAAGAATACCAAGATTGTGCAATCTATGCGATGTGAGGTTTGCAAGATTGATTGTAATAGCAAAGATGTACTTGATCGACATTTATTGGGAAAGAAACACAAGAAGAATCTACTGAAACGAGAAGAATTGAGTAATGATTCAACTGCCCTCGCCATTGCAACAGTTCCCGAGAATCCAAGGATGGAAAAGAGTTCATCAGGTGAGACGAGCAAGCCCTTGGATCAGCAAATGATAATGAGGCCCTCGGTGTTGGCTTTTGGTGAGGATTTGGAGACAAAAAAACGAAAGCTTATGGAAAGTGGAACAGCGGTTGATTCTGTGATTGTGTGCACTATATGCGACGTTGCGTGCAATAGTCAAATAGTGTTCAATTACCATCTCAATGGAAAAAGGCATGCTGCTCAGGCGGGCATAAGACCTCCAAATGGAACGGAGCCTGTGTTGCCTGCAAATCTAAACCCCATTTTGCGGACCAACCCAGTGGTTCGGCCTTGCATCAGCAATGCCATGAGAAGGGAACCGAAGAAAACAAAGATTGTGCAATCTGCATGGTGTGAGATCTGTAAGATTGACTGTAACAGCAAGGATGTCCTCGACCAACACAAATTGGGAAAAAAACATAAGAAGAATCTTGAGAAACTAGAAGAATCGAAGAAAAATGCCAATACCCTTGCTCCCGCTGCTGCTGCCCCAACAGCAAAGACTCCCGTAATCGGCCTGCAGGAAAACCCGGCGGTTCAACAATCAAGGAAGAAGCCAGCCCCCTCGTCGGTGCCTGAAGAGGATCTGGATACAAAGAGAAGGAAGCTCATGGATAGCGGGGCAGCAGCAGATGCAGTGAAGGTATGCACGATATGCAATGTGGCATGCAACAGCCAGACAGTCTTCAATTTTCACCTTGCAGGGCAAAAGCATGCTGCCATGGTGAAGAAGCAAGCAGCTGGAACGGAAGCTCCTGGCCCTCAGGTGGTAACTGCTGCCTGA 1497 0.4803 MDFSRWTEIQQHPQNPNPSTDPYTQFYNAQQSSYAHYPYYPAHQPQIPNPNAALKHHEIPSTQFEPSPDVSLRPPGIDSYAAVNSYHPPHVGFEAQAAVAYSLQPAQMGALSAATYYQDPNIAHNFAVKEAIRHYGANPVGYVPGTSPTPVFLNNKWINIPLANGAIKRKLKNTKIVQSMRCEVCKIDCNSKDVLDRHLLGKKHKKNLLKREELSNDSTALAIATVPENPRMEKSSSGETSKPLDQQMIMRPSVLAFGEDLETKKRKLMESGTAVDSVIVCTICDVACNSQIVFNYHLNGKRHAAQAGIRPPNGTEPVLPANLNPILRTNPVVRPCISNAMRREPKKTKIVQSAWCEICKIDCNSKDVLDQHKLGKKHKKNLEKLEESKKNANTLAPAAAAPTAKTPVIGLQENPAVQQSRKKPAPSSVPEEDLDTKRRKLMDSGAAADAVKVCTICNVACNSQTVFNFHLAGQKHAAMVKKQAAGTEAPGPQVVTAA* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01219 498 SUPERFAMILY beta-beta-alpha zinc fingers 335 385 IPR036236 -
Eupl04g01219 498 Gene3D Classic Zinc Finger 259 308 - -
Eupl04g01219 498 Gene3D Classic Zinc Finger 167 212 - -
Eupl04g01219 498 Gene3D Classic Zinc Finger 427 484 - -
Eupl04g01219 498 Gene3D Classic Zinc Finger 339 386 - -
Eupl04g01219 498 SMART ZnF_U1_5 177 211 IPR003604 GO:0003676|GO:0008270
Eupl04g01219 498 SMART ZnF_U1_5 449 483 IPR003604 GO:0003676|GO:0008270
Eupl04g01219 498 SMART ZnF_U1_5 351 385 IPR003604 GO:0003676|GO:0008270
Eupl04g01219 498 SMART ZnF_U1_5 276 310 IPR003604 GO:0003676|GO:0008270
Eupl04g01219 498 SMART c2h2final6 180 204 IPR013087 -
Eupl04g01219 498 SMART c2h2final6 354 378 IPR013087 -
Eupl04g01219 498 SMART c2h2final6 279 303 IPR013087 -
Eupl04g01219 498 SMART c2h2final6 452 476 IPR013087 -
Eupl04g01219 498 MobiDBLite consensus disorder prediction 414 436 - -
Eupl04g01219 498 Coils Coil 375 395 - -
Eupl04g01219 498 MobiDBLite consensus disorder prediction 1 22 - -
Eupl04g01219 498 SUPERFAMILY beta-beta-alpha zinc fingers 175 208 IPR036236 -
Eupl04g01219 498 Pfam Zinc-finger of C2H2 type 355 378 - -
Eupl04g01219 498 Pfam Zinc-finger of C2H2 type 182 204 - -
Eupl04g01219 498 Pfam Zinc-finger of C2H2 type 453 476 - -
Eupl04g01219 498 Pfam Zinc-finger of C2H2 type 280 303 - -
Eupl04g01219 498 PANTHER ZINC FINGER PROTEIN 385B-LIKE 172 306 - -
Eupl04g01219 498 SUPERFAMILY beta-beta-alpha zinc fingers 450 484 IPR036236 -
Eupl04g01219 498 SUPERFAMILY beta-beta-alpha zinc fingers 274 306 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01219 Eupl-Chr4 18561276 18578490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01219 261 485 C2H2 Transcription Factor Family AT5G61190 28.194 1.28e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01219 - - qsu:112029653 291.582