Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01213 ATGGCGAATCCAAATACTTCTTCGAATGTATTGTCTTTGGAATCCTCAAACGTTGGTGGGACAAATACCATTAACTCAAACATGGGCCTGCCTCAGGTACCCCCCAACCAGCAAATTAGGACATCCTCACATGGGCCAGTGGCGATTCTGTGGGACATTGAGAACTGCCCCGTACCGAGCGATGTCCGCCCAGAAGATGTAGCCGGTAACATTAGAATGGCATTGCGTGTCCACCCCATTATCAAAGGTGCTGTTACAATGTTCTCCGCCTATGGAGATTTCAATGCCTTCCCCAGACGCCTAAGAGAGGGTTGTCAAAGAACTGGTGTGAAACTCATAGATGTCCCGAATGGAAGAAAGGACGCTGCTGACAAAGCTATCCTAGTTGACATGTTTCTCTTTGCACTTGACAACCCTCCACCATCCTCAATCTTACTGATTTCCGGGGATGTAGATTTTGCTCCAGCTTTGCACATACTTGGCCAACGTGGGTACACCGTCATCCTCGTTATCCCTGCAGGTGTGGGTGTCTCGTCCGCCCTTAGCAATGCTGGAAGGTTCGTCTGGGACTGGCCTAGCGTGGCTCGTGGAGAAGGCTTTGTGCCCCCTAAGACACTTATGTCCCGCGGATCGGCTGAACTTGCTGGGTATCTCATGGGGTGCCATATCAACGACAACCCAGATGGCCAAAACGAAGAAGAAGCGATCGTGTATAGAGGAATCTCTCAAAGCGAGTACACAGCTCGGGCTAACATCAACCAGATATACTGCTACTCTAGGGATTTCTCAAGGGTGTCACAGTCGTTATCTGAATTCAACAGTAATTTAACTATGCCTCTTTTTCCCACTTCAAGGTCCCATAGTCTTCCATCTGGTTTGAGTGAGGTTTCAGCTGGACCTGCTGTCAGCGATCGAAATGAAGTGCAAGATCCAATGATGTGGGTCCAGCCTGGAGATATCAACGGTCTCAAAGCCCAGTTGGTGAAGCTGATTGAGCTTTCAGGGGGTTGCCTACCTTTGGTCCGTGTTCCTGCGGAGTACAATAAGATTTTCGGTCGGCCCCTGTATGTGGCCGAGTATGGGGCATTTAAGCTTGTGAACCTTCTCAAGAAGATGGCTGATGTAATGACTGTGGAGGGAAAAGGTCATAAGAAGTTTGTCTACCTCCGCAACTCCACTGACAGACACGACAAAGCAGGTTCCAGTACTCCATCAGGTCTGTCAAGGAAGGATAAGAAAGGGAAGGGGCCTCCAGAGGAGATCACAGATATTAGTATGTGTGCTATCACTGGTTGCTCTTCTGACGAGTTCTCAGACGATGAGAAGGGCGCAGAAGCTGCTTTGGGCCAAACCCGTGAACTCAATGACTGTCTCGAAAATTTCAGGCAGGAAGTGCAAGAGCTCCTTGTGAGCTGCTCATGTAAGATTCTCTTGGGTAGTTTTGAAGAGATGTACAAGCAGCGATACAAGAAAGCTCTTGACTACCGGAGCTTTGGTGTGGATGAGCTGGAGGAGCTGATCAACAAGGTGAGGGACGTCGTGCTTTTATACGAAGAACAGGAAAGCAAGAGAAAGTTCCTTGTCCCCAACGGCATAGGTGGCTAG 1605 0.4916 MANPNTSSNVLSLESSNVGGTNTINSNMGLPQVPPNQQIRTSSHGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPIIKGAVTMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSILLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALSNAGRFVWDWPSVARGEGFVPPKTLMSRGSAELAGYLMGCHINDNPDGQNEEEAIVYRGISQSEYTARANINQIYCYSRDFSRVSQSLSEFNSNLTMPLFPTSRSHSLPSGLSEVSAGPAVSDRNEVQDPMMWVQPGDINGLKAQLVKLIELSGGCLPLVRVPAEYNKIFGRPLYVAEYGAFKLVNLLKKMADVMTVEGKGHKKFVYLRNSTDRHDKAGSSTPSGLSRKDKKGKGPPEEITDISMCAITGCSSDEFSDDEKGAEAALGQTRELNDCLENFRQEVQELLVSCSCKILLGSFEEMYKQRYKKALDYRSFGVDELEELINKVRDVVLLYEEQESKRKFLVPNGIGG* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01213 534 Coils Coil 500 523 - -
Eupl04g01213 534 Pfam OST-HTH/LOTUS domain 322 387 IPR025605 -
Eupl04g01213 534 Pfam OST-HTH/LOTUS domain 458 519 IPR025605 -
Eupl04g01213 534 MobiDBLite consensus disorder prediction 1 22 - -
Eupl04g01213 534 Pfam NYN domain 46 185 IPR021139 GO:0004540
Eupl04g01213 534 ProSiteProfiles OST-type HTH domain profile. 319 391 IPR025605 -
Eupl04g01213 534 CDD PIN_limkain_b1_N_like 46 172 - -
Eupl04g01213 534 Gene3D - 39 192 - -
Eupl04g01213 534 MobiDBLite consensus disorder prediction 394 421 - -
Eupl04g01213 534 ProSiteProfiles OST-type HTH domain profile. 457 531 IPR025605 -
Eupl04g01213 534 PANTHER LIMKAIN B LKAP 31 495 IPR024768 GO:0005777|GO:0010468
Eupl04g01213 534 Gene3D - 320 388 IPR041966 -
Eupl04g01213 534 Gene3D - 452 525 IPR041966 -
Eupl04g01213 534 CDD LOTUS 323 389 - -
Eupl04g01213 534 CDD LOTUS 458 524 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01213 47 197 C2H2 Transcription Factor Family AT5G61190 44.371 3.07e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01213 - - psom:113343124 781.941