Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01196 ATGGCGACTCCGAAACCGCAACGGTCCCCAGCAGAGATAGAAGATATAATTCTTCGAAAGGTTTTCTTAGTCTCCCTAACTGACTCAGTGGAAAATGATTCTAGGATCGTTTATTTAGAGATGACAGCGGCTGAACTTCTCAGCGAAGGGAATCCACTTATGCTAAGTCAAGATTTGATGGAGCGTGTCCTGATCGATCGCCTCCAGTTTCCTGGTGCTGAACCACCTTTCCCTTACTTGGTTGGGTGCTACCGTCGTGCTTATGAAGAGGGGAGGAAGATTAGTTCCATGAAGGACAAGACTATCCGATCTGGATTGGAGTCTGCTGTCAGGCAGGCGAAGAAGTTGGCTGTTTCGTACTGCCGGATCCATTTGGGCAATCCCGATATGTTTTCGAACAGCAATAACAATTCAAATAAGGCAACAGTTTCGCCTTTGCTTCCTTTAATTTTCTCTGAAGTTTCGAGTTCAGTTGATGGTTTTGGGGGAAGCAGTGCTGGCGGTGGACCGCGATGCCCACCAGGTTTCTTAGATGAATTTTTCCGGGACACAGATTTGGATAGCTTGGATCCAATTTTGAAGGGCTTGTATGAGGATTTGAGGGGGAGTGTGCTTAAGGTATCTGCGCTTGGGAATTTTCAGCAGCCATTGAGAGCATTGATTATGTTGGTTAGCTTTCCAAACGGTTCAAAGGCTCTGGTGAATCATCCGTGGTGGGTCCCGAGGGGGGCTTATGTGAATGGGCGTGTAATTGAGATGACGAGCATTTTGGGTCCTTTCTTTCACGTCAGTGCTCTTCCTGATCAAACTATCTTCAAGAGTGAGCCGGATGTCGGCCAGCAGTGCTTCTCAGAAGCTTCCACTCGTCGACCGGCTGATCTGTTATCTTCCTTCACAACGATTAAGACTGTCATGAATAACTTATATGATGGCCTTGGAGAAGTTCTTCTCTCTCTCCTTAAAAACACTGATACCCGGGAGAGCGTTCTTGAGTATCTCGCTGAAGTGATCAACAAAAACTCATCAAGGGCTCATATACAGGTTGATCCATTATCTTGTGCAAGTTCAGGCATGTTCGTCAATCTCAGTGCTGTCATGCTTCGGCTTTGTGAGCCCTTCTTAGATGCAAATTTGACAAAAAGAGACAAAATTGATCCCAAATATGTATTTTACAATACCCGTTTGGATTTCAGAGAATTGACAGCTCTGCATGCATCATCGGAAGAAGTTGCTGCATGGATTGATAAAGATAACCCTGAGAAAACTGATGGCTCCAGACAGAAGAGCGATGAAGAGAACCGAATCTTACTATCTCAAGAAGCCACAAGCTCTGGCAGTAATATTGGTGTAGCTTCTGTCATTTCTAAAGCCAAGCCGTTGTCAAGTTGCAGTGGAAAAACTAAATATACATTTATTTGTGAATGTTTTTTTATGACCGCAAGGGTGCTCAATTTGGGGTTATTAAAAGCATTTTCTGACTTTAAACATTTAGTTCAGGACTTGTCCAGATGTGAGGATACTCTGTCCACCTTTAAAGCCATGCAGGGGCAAGCATCCTCTCCACAACTGGAGCTGGATATAGCTCGCCTTGAGAAAGAAATTGAGTTGTACTCACAGGAGAAGCTGTGTTATGAAGCTCAGATACTGAGGGATGGAGCATTTCTTCAGAATGCACTATCCTTTTACAGGTTAATGGTGGTTTGGTTGGTCGGCCTTGTGGGTGGTTTTAAAATGCCTCTGCCATCAAGTTGCCCAATGGAATTTGCTTGTATGCCTGAGCACTTTGTTGAAGATGCCCTGGAATTGCTTATTTTTGCTTCTCGGATCCCTAAAGCTCTGGATGGGTTCTTGCTGGATGAGTTTTTGAACTTTATTATCATGTTCATGGCGAGTCCGGAATTTATCAGAAACCCTTATCTAAGAGCAAAGATGGTAGAAGTCTTGAATTGTTGGATGCCTCATAGAAGTGGTTCGTCTGCAACGGCTACCCTTTTTGAAGGGCATCAACTATCTCTTGAGTATCTTGTCCGGAATCTTCTGAAGCTTTATGTTGACATTGAGTTCACAGGTTCTCATACACAGTTCTACGACAAGTTCAACATCCGCCATAATATTGCCGAACTTCTCGAATACCTTTGGCAGGTCCCTAGCCATCGTAATGCATGGAGACAGATTGCCAGAGAAGAGGAGAAGGGTGTTTATTTGAACTTTTTGAACTTCCTGATAAATGATAGCATATATCTTCTTGATGAAAGTCTTAACAAAATTCTTGAACTAAAAGAGATGGAAGCCGAGATGTCTAATACCGCAGAATGGGAACGAAGGCCAGCTCAAGAGAGGCAGGAGAGAACCCGGCAGTTCCATTCTCAGGAGAATATTATCCGAATTGATATGAAATTGGCAATGGAAGATGTGGGCATGCTGGCATTTACATCAGAACAAATTACAGTTCCATTCCTTCTTCCAGAGATGGTTGAAAGAGTGGCCAACATGCTCAATTACTTCTTGTTACAACTTGTGGGCCCCCAACGAAAAGCTCTTAGTCTAAAAGACCCTGAAAAATACGAGTTCCGGCCAAAAAAATTGCTTAAGCAGATTGTTGACATATACGTTCATCTGGCGAGGGGAGACAAGGAAAGTATATTCCCAACTGCCATCTCAAAGGACGGTCGATCATACAATGAACAGTTGTTTACTGCTGCAGCAGATGTTCTGCGTAGGATAGGTGAAGATGGTAGGGTGATACAGGAATTTGTTGAGCTCGGTGCAAAAGCCAAAGTTGCAGCTTCTGAGGCAATGGACACCGAGGCTGCCCTTGGAGAGATACCAGATGAATTCCTTGATCCAATTCAATACACGTTAATGAAGGATCCTGTGATCCTACCTTCTTCAAGAATCACAGTAGATCGGCCTGTCATTCAGAGGCACCTTCTGAGTGATAATAGCGACCCATTCAACCGTTCTCATCTTACTCAAGACATGCTCATTCCCGATGTAGAACTGAAGGCAAGAATAGAAGAGTTCATCAGGTCCCAAGAACTAAAGAAGCATGGGGAAGGACTAAGCATGCAAAGCACCAAGACAATACTGCAAACCGGGAGTGGTGAAATGACTTTAATTGACTAG 3126 0.4395 MATPKPQRSPAEIEDIILRKVFLVSLTDSVENDSRIVYLEMTAAELLSEGNPLMLSQDLMERVLIDRLQFPGAEPPFPYLVGCYRRAYEEGRKISSMKDKTIRSGLESAVRQAKKLAVSYCRIHLGNPDMFSNSNNNSNKATVSPLLPLIFSEVSSSVDGFGGSSAGGGPRCPPGFLDEFFRDTDLDSLDPILKGLYEDLRGSVLKVSALGNFQQPLRALIMLVSFPNGSKALVNHPWWVPRGAYVNGRVIEMTSILGPFFHVSALPDQTIFKSEPDVGQQCFSEASTRRPADLLSSFTTIKTVMNNLYDGLGEVLLSLLKNTDTRESVLEYLAEVINKNSSRAHIQVDPLSCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDPKYVFYNTRLDFRELTALHASSEEVAAWIDKDNPEKTDGSRQKSDEENRILLSQEATSSGSNIGVASVISKAKPLSSCSGKTKYTFICECFFMTARVLNLGLLKAFSDFKHLVQDLSRCEDTLSTFKAMQGQASSPQLELDIARLEKEIELYSQEKLCYEAQILRDGAFLQNALSFYRLMVVWLVGLVGGFKMPLPSSCPMEFACMPEHFVEDALELLIFASRIPKALDGFLLDEFLNFIIMFMASPEFIRNPYLRAKMVEVLNCWMPHRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAREEEKGVYLNFLNFLINDSIYLLDESLNKILELKEMEAEMSNTAEWERRPAQERQERTRQFHSQENIIRIDMKLAMEDVGMLAFTSEQITVPFLLPEMVERVANMLNYFLLQLVGPQRKALSLKDPEKYEFRPKKLLKQIVDIYVHLARGDKESIFPTAISKDGRSYNEQLFTAAADVLRRIGEDGRVIQEFVELGAKAKVAASEAMDTEAALGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDNSDPFNRSHLTQDMLIPDVELKARIEEFIRSQELKKHGEGLSMQSTKTILQTGSGEMTLID* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01196 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 941 1019 IPR013083 -
Eupl04g01196 1041 Pfam U-box domain 942 1012 IPR003613 GO:0004842|GO:0016567
Eupl04g01196 1041 Coils Coil 520 547 - -
Eupl04g01196 1041 Pfam Ubiquitin elongating factor core 257 925 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Eupl04g01196 1041 PANTHER UBIQUITINATION FACTOR E4 3 1017 IPR045132 GO:0000151|GO:0030433|GO:0034450
Eupl04g01196 1041 SMART Ubox_2 945 1008 IPR003613 GO:0004842|GO:0016567
Eupl04g01196 1041 ProSiteProfiles U-box domain profile. 941 1015 IPR003613 GO:0004842|GO:0016567
Eupl04g01196 1041 FunFam Ubiquitin conjugation factor e4 a 941 1019 - -
Eupl04g01196 1041 SUPERFAMILY RING/U-box 934 1013 - -
Eupl04g01196 1041 CDD RING-Ubox_UBE4A 944 1012 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01196 Eupl-Chr4 18246499 18257091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01196 1 1041 U-box Gene Family AT5G15400 75.951 0.0 1626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01196 K10597 - ming:122091381 1740.7