Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01170 ATGTCGGAAGAAGAAACCGATCCGTTCCGGTTTTGCGTAATCGTCTTCTTAATCCTGATTACAGGTCGGATTGTTGCGGAAGCTTCTTTACAGGCAGACAGGGAAGTTCTGCTGAAGCTCAAATCATTTCTTTTAGACGAGAATAAAGTGAATCGAGGCCGATACGCGGAATGGAGCGAACAGAGTTTATCTCCCTGTGGTTGGCTAGGAATCTCTTGCAACGGCGGAAGAGTCACAGAAATCAATCTATCTCGTTACAACATCTCTGGCAATATCTTTGGAAACTTCTCTCTTCTAACCGAACTTTCCAAATTGGATCTCTCCGAGAACACAATTAGTGGAGAAATTCCTGCTGATTTGAGTCTATGCAGTAACCTCAAGTATCTAAATCTATCTCACAATATGCTCGAAGGAGAGCTGAACTTGACTGGATTAAACAATCTAGAAACACTCGACCTGACTGTCAATAGATTCCAAGGTGGAATTCAATCGAATTTTCCGGCAATTTGCAACAAGTTAATCACTCTCAACATCTCGGCGAATAACTTGACCGGCGGGATTGATAATTGTTTCGACGAATGCTGGACATTGCAGTATCTCGATCTCAGCTCGAACAATTTCAGTGGACAGTTATGGTTAGGGTTCCCAAGGTTACGAGAGTTCACGGTTTCGGAGAATAAGCTCAGTGGGGAAGTCTCACCATCGATCTTTACTGAGAATTGCAATCTGGAAGTTCTGGATTTGTCGGAAAATCATTTCTATGGAAAAATTCCAAAAGAGGTTGCAAATTGCAGAGGTTTGCTTTCTTTGAATCTATGGGGGAACAATTTCACTGATCAGGTTCCAGCCGAGATTGGATCACTTTCAAATCTCGAAGTGTTGTTATTAGGAAGCAATAACTTATCAAGAGAGATTCCAGAACCACTCTTGAATTGCAGAAACTTAACGTTTTTAGATTTCAGCAAGAACGGATTTGGAGGAGATATACAAAATATCTTTGGAAGATTCGTGCAGGTGAAATTTCTTGTGTTGCATGGAAATTCATACACAGGAGGGATAAATTCTTCAGGGGTTCTCAGATTACCGAATGTTAGTCGATTAGACCTTAGCTTCAACAACTTCTCTGGTCCATTACCGGTAGAAATCTCCGAAATGCCGCGTTTACAGTTCTTGATGCTTGCATATAACCAATTCTCTGGCATGATACCACCAGAATTTGGAAATCTCTCAACTCTACAAGCACTTGATCTCTCCTTCAATAGGCTAACGGGAACAATACCTCCTCAAATTGGAAAACTAAAATCTCTCTTATGGTTGATGCTTGCGAACAATAATTTGACCGGAGAAATTCCACCAGAGATTGGAAATTGCGGCAGCCTATTGTGGGTGAATTTCGCCAACAACCAATTATTCGGAAAAATTCCACCTCAATTGTCGAATATTGGTAAGAACGTCACTCCAACATTCGAATTAAATAGGAAGAACGACAGAGTCATAGCCGGTTCTGGCGAGTGTTTGTCAATGAAACGGTGGATCCCAGCGGACTATCCGCCTTTCAGTTTTGTGTATGATCTCCTTACAAGGAAGAGGTGCCGAAGCATTTGGGATCAGTTACTTAAAGGCTACGGCATTTTCCCAATCTGTGTTGATGGTTCATCAGTCCGAACACTACAAATTTCTGGCTATCTTCAGCTCGTCGGAAATCAGTTTTCAGGTGAAGTCCCACCAGCAATTGGTCGGATGCTCAATTTCAGTCTCCTTCATTTGGGATTCAATAAATTCTCAGGCAGATTCCCACCAGAGATCAGACGGTTGCCACTCGTCGTTCTCAACATCACTTACAACAATTTTTCTGGTGAAATTCCACCGGAACTTGGACAACTCAAGTGCTTACAGAACCTCGATTTGTCCCACAACAATTTCTCCGGTGTGTTCCCAACAAGCTTGAACAGTTTGACTGATATGAACAAATTCAATGTTTCATTCAATCCTTTGATCTCCGGTGTAATTCCAACGACCGGGCAGCTAGCGACATTTGACCGTGACTCCTTCCTCGGAGACCCGCTCTTATACGTTCCATCTTTTCCAAACAACTCTGCAACAAGCTTGCTACCAGATAGGAAACCCGGCAGAAAGTCAAAAAAACTGACCAGCATAGCTGCATTTTTGGTGTTCTTAGTCCTAACTCTTGTTTTCATAGTCTGCGGAATTCTGTCGTTTGTACTGTTCATTGCCACTAAAACTCAGCCAGAACCGCCAGAGTTTCTGTTAGAAGATACTAAGTACCGGCATGACATGGTATCGAGCTCCAGTGGGTCATCGCCCTTATCGTCGGATATCGTGAAGGTCATTCGCCTGGATAAAACAGCATTTACATATGGAGATATTTTTAAGGCTACAGGGAACTTTTCAGATGAGAGAATTATCGGCAAGGGCGGATTTGGAACGGTGTACCATGGTGTATTGCCTGATGGAAGAGAAGTGGCAGTGAAGAAGCTACAGAGAGAAGGTTTTGAAGGGGAGAGAGAGTTTCGGGCTGAAATGGAGGTTTTAAGTGGTAGCGGTATCGGGTGGCCACACCCAAATCTAGTAACACTTTATGGATGGTGCCTGTATGGATCCGAGAAACTCTTGGTGTATGAGTACATGGAAGGTGGGAGCTTGGAGGATCTTGTGTCGGATAGGACAAGGTTGACATGGCGACGGCGTGTTGATGTGGCAATTGGCGTGGCACGCGCCTTAATGTTTCTGCACCATGAGTGTTTTCCAGCCATTGTGCACAGGGATGTGAAGGCTAGCAATGTGTTATTAGATAGGGAAGGGAAGGCACATGTGACGGATTTCGGTCTGGCTAGGGTGGTGGGTGCAGGAGAGAGCCATGTGAGCACAATAGTGGCTGGAACAGTAGGATATGTGGCTCCTGAGTATGGACATACATGGCAAGCAACAACAAAGGGCGATGTGTATAGCTTCGGAGTACTAGCAATGGAGTTGGCGACTGGGAGGCGAGCTGTTGACGGAGGGGAAGAGTGTCTGGTAGAATGGGCTAGACGGGTCATCGGAGACAGACGGAAAGGAATGAGCCAAGTGATTCCAGTGGTAATTCTTGGATCTGGGCTTGCTGAGGGAGCAGAGGAAATGTGTGAGTTACTAAAGATCGGTCTGCGCTGCATTGCAGAAACACCACAGGCTAGACCAAATATGAAGGAGGTGCTAGCAATGTTGATTAAGATTTCCGGCAACAGCGATGATTTCGGTGACGAGTCTTCTCCCCCAGTTTAA 3282 0.4452 MSEEETDPFRFCVIVFLILITGRIVAEASLQADREVLLKLKSFLLDENKVNRGRYAEWSEQSLSPCGWLGISCNGGRVTEINLSRYNISGNIFGNFSLLTELSKLDLSENTISGEIPADLSLCSNLKYLNLSHNMLEGELNLTGLNNLETLDLTVNRFQGGIQSNFPAICNKLITLNISANNLTGGIDNCFDECWTLQYLDLSSNNFSGQLWLGFPRLREFTVSENKLSGEVSPSIFTENCNLEVLDLSENHFYGKIPKEVANCRGLLSLNLWGNNFTDQVPAEIGSLSNLEVLLLGSNNLSREIPEPLLNCRNLTFLDFSKNGFGGDIQNIFGRFVQVKFLVLHGNSYTGGINSSGVLRLPNVSRLDLSFNNFSGPLPVEISEMPRLQFLMLAYNQFSGMIPPEFGNLSTLQALDLSFNRLTGTIPPQIGKLKSLLWLMLANNNLTGEIPPEIGNCGSLLWVNFANNQLFGKIPPQLSNIGKNVTPTFELNRKNDRVIAGSGECLSMKRWIPADYPPFSFVYDLLTRKRCRSIWDQLLKGYGIFPICVDGSSVRTLQISGYLQLVGNQFSGEVPPAIGRMLNFSLLHLGFNKFSGRFPPEIRRLPLVVLNITYNNFSGEIPPELGQLKCLQNLDLSHNNFSGVFPTSLNSLTDMNKFNVSFNPLISGVIPTTGQLATFDRDSFLGDPLLYVPSFPNNSATSLLPDRKPGRKSKKLTSIAAFLVFLVLTLVFIVCGILSFVLFIATKTQPEPPEFLLEDTKYRHDMVSSSSGSSPLSSDIVKVIRLDKTAFTYGDIFKATGNFSDERIIGKGGFGTVYHGVLPDGREVAVKKLQREGFEGEREFRAEMEVLSGSGIGWPHPNLVTLYGWCLYGSEKLLVYEYMEGGSLEDLVSDRTRLTWRRRVDVAIGVARALMFLHHECFPAIVHRDVKASNVLLDREGKAHVTDFGLARVVGAGESHVSTIVAGTVGYVAPEYGHTWQATTKGDVYSFGVLAMELATGRRAVDGGEECLVEWARRVIGDRRKGMSQVIPVVILGSGLAEGAEEMCELLKIGLRCIAETPQARPNMKEVLAMLIKISGNSDDFGDESSPPV* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01170 1093 Gene3D Phosphorylase Kinase; domain 1 767 882 - -
Eupl04g01170 1093 FunFam serine/threonine-protein kinase BRI1-like 2 764 882 - -
Eupl04g01170 1093 SMART serkin_6 803 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01170 1093 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Eupl04g01170 1093 Pfam Leucine rich repeat 147 207 IPR001611 GO:0005515
Eupl04g01170 1093 SUPERFAMILY L domain-like 562 705 - -
Eupl04g01170 1093 CDD STKc_IRAK 809 1078 - -
Eupl04g01170 1093 Pfam Leucine Rich repeat 410 424 IPR001611 GO:0005515
Eupl04g01170 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 925 937 IPR008271 GO:0004672|GO:0006468
Eupl04g01170 1093 SUPERFAMILY RNI-like 62 282 - -
Eupl04g01170 1093 ProSiteProfiles Leucine-rich repeat profile. 125 146 IPR001611 GO:0005515
Eupl04g01170 1093 FunFam Leucine-rich repeat receptor-like protein kinase 883 1085 - -
Eupl04g01170 1093 SUPERFAMILY Protein kinase-like (PK-like) 780 1076 IPR011009 -
Eupl04g01170 1093 SUPERFAMILY L domain-like 215 476 - -
Eupl04g01170 1093 Pfam Protein kinase domain 804 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01170 1093 ProSitePatterns Protein kinases ATP-binding region signature. 809 832 IPR017441 GO:0005524
Eupl04g01170 1093 Gene3D Ribonuclease Inhibitor 544 702 IPR032675 -
Eupl04g01170 1093 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 241 1077 - -
Eupl04g01170 1093 Gene3D Ribonuclease Inhibitor 214 356 IPR032675 -
Eupl04g01170 1093 Gene3D Ribonuclease Inhibitor 357 498 IPR032675 -
Eupl04g01170 1093 Gene3D Ribonuclease Inhibitor 143 213 IPR032675 -
Eupl04g01170 1093 Gene3D Ribonuclease Inhibitor 32 142 IPR032675 -
Eupl04g01170 1093 Gene3D Transferase(Phosphotransferase) domain 1 883 1088 - -
Eupl04g01170 1093 ProSiteProfiles Protein kinase domain profile. 803 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g01170 1093 FunFam Putative LRR receptor-like serine/threonine-protein kinase 336 497 - -
Eupl04g01170 1093 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 237 329 - -
Eupl04g01170 1093 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 48 236 - -
Eupl04g01170 1093 SMART LRR_typ_2 99 123 IPR003591 -
Eupl04g01170 1093 SMART LRR_typ_2 628 651 IPR003591 -
Eupl04g01170 1093 SMART LRR_typ_2 409 432 IPR003591 -
Eupl04g01170 1093 SMART LRR_typ_2 433 457 IPR003591 -
Eupl04g01170 1093 SMART LRR_typ_2 288 312 IPR003591 -
Eupl04g01170 1093 SMART LRR_typ_2 385 408 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01170 Eupl-Chr4 17877625 17881952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01170 317 665 Receptor kinase-like Gene Family AT1G55610 26.271 2.73e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Eupl04g01170 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01170 - - tcc:18604765 1533.47