Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01168 ATGGCGTTTGTGGATCTCAGGGCGGATTGTGCAGATGGGAGTGGTTCTGGTTCGAGCTTTTCGACGGAACAAGAAAATGTAATGGCTAATGAGAATCCGAGGCAGAATGTTATGTCTGTGGAGCTCGCGATCAAAAGGGAGCTAGCCTACCGAAGGAAGGTGGAGAAGTTGCAATTGCAACCTCGTGGTGGCATAAAGGAAGCCCCAATGCATTCCCAGGGGCCACCTCCAGCTCCAAGTCCAAGTCTGGTGGGAATGAAGAGAAAAGCTCCATCCAGTAATCTCCAATGTGTGCCACCTCAACAATCACGACCATCTAACGGTTACCAATCCCTTCAAAACCATTCGGTTAACTTGTTTTGCAAGATCTGCCAGGTGCCCTGCTCAAGTGCGATTAGTTTGAAGCAGCACCGTGAAGGTAGTAAGCACAGGGCCAAACTACAAGAGTTGCAGGAAAGTGGGAAGAATGTCGGAGAGAATGGGGGTCCACAACATTGGTGCAAAGTTTGTAGCGTCATGTGCGGGAACGAATATTCATTCCTGCAACATGTTACCGGAAAGAAGCATACTACTCGTGTACAAACAATTGAAATTTCAAAGAGATCCAAAGAAGAGGCTGAAAGGGAAGCTTTGAAGGTCAAATGGGATGAACTGGAGTGGGAGATGGTCGTTTGA 675 0.4785 MAFVDLRADCADGSGSGSSFSTEQENVMANENPRQNVMSVELAIKRELAYRRKVEKLQLQPRGGIKEAPMHSQGPPPAPSPSLVGMKRKAPSSNLQCVPPQQSRPSNGYQSLQNHSVNLFCKICQVPCSSAISLKQHREGSKHRAKLQELQESGKNVGENGGPQHWCKVCSVMCGNEYSFLQHVTGKKHTTRVQTIEISKRSKEEAEREALKVKWDELEWEMVV* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01168 224 MobiDBLite consensus disorder prediction 60 110 - -
Eupl04g01168 224 SUPERFAMILY beta-beta-alpha zinc fingers 156 207 IPR036236 -
Eupl04g01168 224 Gene3D Classic Zinc Finger 156 202 - -
Eupl04g01168 224 Gene3D Classic Zinc Finger 107 155 - -
Eupl04g01168 224 MobiDBLite consensus disorder prediction 1 33 - -
Eupl04g01168 224 SUPERFAMILY beta-beta-alpha zinc fingers 99 150 IPR036236 -
Eupl04g01168 224 SMART ZnF_U1_5 162 196 IPR003604 GO:0003676|GO:0008270
Eupl04g01168 224 SMART ZnF_U1_5 116 150 IPR003604 GO:0003676|GO:0008270
Eupl04g01168 224 SMART c2h2final6 119 143 IPR013087 -
Eupl04g01168 224 SMART c2h2final6 165 189 IPR013087 -
Eupl04g01168 224 MobiDBLite consensus disorder prediction 94 110 - -
Eupl04g01168 224 PANTHER OS06G0651300 PROTEIN-RELATED 34 158 - -
Eupl04g01168 224 Pfam Zinc-finger of C2H2 type 120 143 - -
Eupl04g01168 224 MobiDBLite consensus disorder prediction 14 33 - -
Eupl04g01168 224 Pfam Zinc-finger double-stranded RNA-binding 164 189 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01168 Eupl-Chr4 17857597 17863515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01168 119 216 C2H2 Transcription Factor Family AT5G61190 27.193 6.63e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01168 - - ming:122078402 181.415