Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01159 ATGGAAGAAACAGAAGACTCCAAAACGAACAGTAAATGCACTTCTAAGGCCAGGAGTTGCAGAGGGAGGACCGACCCTCACCATCATCAGCTGCTGCAGCATTCGTTTCATGATGGGTTTTTCTACCAGAACCGATACCAGAGATATCCAGCTCTTCTTCCTCTACCTCCTCCAATACTTCTGCAACTACCTGCAGCTCCACCTCTCCCTCAAAACCAGAACTACAGATCAAAAACCCATTTGCAGAAGCCTTCATGGAAGCAGAAGAAGCCACCTGGTGCCTCCTCCTCCGACACCCAGGTCTCAGTTTTCACTGTTTCACGAGCTCCAGAGAAGCTCCAAGAGAAAACAAGTTATCCCGTTAGAGGAGAAGATGAAAGGGGGGTGATGCCTGCTACACCACAGGCACTAGTGGCAACAAAGAGACCAGACTCTGGTGGCCTAGACGGGTCTGTGATCCCCCTCCTTGCTAACCATTTCCTAGTCCAATTCGACTCTTCTCAACGAATTTTCCATTATGATGTTGAGATCTCTCCGCACCCGTCCAAGGAAGTTGCTCGAATGATCAAGCAGAAATTGGTACAGGACAATCAGAAAGTGCTCTCTGGTGCTCTTCCAGCTTTTGACGGCCGAAAGAATCTCTACAGCCCTGTCGAATTCGAGAACAATAAGCTTGAGTTATTTGTTAACCTCCCAATCTCCACAGCTAAGTTACCTTTGGGAGAAATCGATGGCACGCCAGAGAAGAGACAACAATGTAAACTCTTTCGGGTAAACATCAAGCTTGCTTCGAAGTTGGAAGGACGGGAATTGAGCAACTACTTGAGCAAGGAGGGGGAAGATTGGGTCCCTCTTCCTCAGGATTATCTCCATGCATTGGATGTCGTCTTGCGAGAGAGCCCGACAGAGAAGTGTATACCTGTGGGGAGGTCTCTTTATTCGAGCTCGATGGGAGGAATTAAAGATATTGGGGGAGGAGCTATCGGGTTAAGAGGATTCTTTCAGAGCCTTAGACCAACCCAACAAGGCCTTGCCCTCAATGTGGACTTCTCTGTGACAGCTTTCCACGAGAGCATTGGCATAATCCCCTATCTGCAGAAGCGGCTTGAGTTCCTTCATGACCTTCCTCGGAGGAAAACGAGAGGTTTGGTTGGGGAAGAGAAGAAAGAAGTGGAGAAGGCATTGAAGAACATCAGGGTCTTTGTCTGTCATCGAGAAACTGATCAGAGATACCGGGTTTGTAGCTTAACCGATGAAGCTACTGAGAATCTCTGGTTTAGGGACAGGGACGGAAAGGATCTAAGACTGGTAGATTACTTCAAGGATCACTACAACCATGATATACAGTTCAGGAACCTGCCATGCTTGCAGATTAGCAAGAGTAAGCCATGTTATCTCCCAATGGAGCTCTGTGTGGTATGTGAAGGCCAGAAGTTTCTTGGGAAGCTCTCAGACGATCAGACTGCAAAGATCCTTAAGATGGGCTGCCAGAGACCAAAGGAACGAAAAGCCATTATTAATGGAGTCATGGGAGGATCGGTTGGGCCAACAAGTGGCAACAATGGAAGAGAATTCAAGCTCCATGTTTCGAGAGAGATGACCCAATTGAATGGGAGAGTCCTTCAACCTCCCAAGCTGAAGCTTGGTAATGGTGGCCATGTAACAGATTTAACTCCATCCCGCCATGACCGCCAGTGGAACTTTCTAGACAGCCATGTCTTTGAAGGCACCCGAATTGAAAGGTGGGCACTAATAAGTTTTGGGGGCACCCCAGATCAGAGGTCCTACATTCCAAGATTCATAAACCAGCTTTCTCAAAGGTGTGAGCAATTGGGTATCTTTCTTAACAAGAACACAATTCTTAGCCCCCAATTTGAACCAATCCAAGTGCTCAACAATGTCTCAGTTTTGGAGTCCAAACTCAGGAAAATTCATAGAGCTGCATCGAACAATCTTCAACTGCTAATATGTGTAATGGAGAGAAAGCACAGAGGCTACGCTGATTTGAAACGAATTGCCGAGACAGGCATTGGTATGGTGAACCAGTGCTGCTTGTACTCCAATCTTAGCAAGCTGGGTTCCCAATTTCTAGCAAATTTAGCTCTAAAGATAAATGCCAAAGTTGGGGGGTGCACTGTGGCTTTGTACAATTCGTTACCTTCTCAAATACCCAGGTTGTTTGAATCAGATGATCCAGCGATCTTCTTGGGTGCTGATGTGACCCATCCACACCCACTCGACGATTTCAGTCCCTCCATTGCGGCTGTTGTGGGTAGCATGAACTGGCCTGCAGCTAACAAGTACATTTCAAGAATGAGATCCCAGACTCATCGACAAGAAATCATCCAAGACCTCGGGGAAATGGTGGGTGAGCTACTGGAAGACTTCTACCAGGAAGTGAACAAGCTCCCCAAGAGAATTCTCTTCTTTAGGGATGGAGTAAGTGAGACCCAGTTCTATAAAGTGCTTCAACAGGAGTTACAGGCCATTAGAGCGGCTTGTTCAAGGTTCCCTGGGTATAAGCCTACAATCACTTTTGCAGTGGTCCAGAAGAGGCACCACACAAGGCTGTTCCCTAAAGAGACTGATCCCTCTTCCACGGGGACCCAGTTTGTCAATGAGAACATACCCCCAGGTACAGTTGTGGATACTGTGATTACCCACCCGAGGGAATTCGATTTCTATCTTTGTAGCCATTGGGGGATGAAGGGAACGAGCCGACCAACCCATTACCATGTCTTATGGGATGAGAACCAGTTCACTTCTGATGAACTGCAGACGCTGGTATACAATCTATGCTACACATTCGTGAGGTGTACCAAGCCGGTTTCTTTGGTTCCCCCAGCTTACTATGCTCACCTTGCTGCCTACAGAGGCAGGCTCTACCTCGAGAGGTCAGACTCCACAGGATTTGCCAGAACGACTACCTCAGTCTCACGAGCTTCCCCTCCATTGAACACTACACCGTTGCCGAAATTAAGCGAGAACGTAAAGAAGCTCATGTTCTATTGCTGA 3015 0.4753 MEETEDSKTNSKCTSKARSCRGRTDPHHHQLLQHSFHDGFFYQNRYQRYPALLPLPPPILLQLPAAPPLPQNQNYRSKTHLQKPSWKQKKPPGASSSDTQVSVFTVSRAPEKLQEKTSYPVRGEDERGVMPATPQALVATKRPDSGGLDGSVIPLLANHFLVQFDSSQRIFHYDVEISPHPSKEVARMIKQKLVQDNQKVLSGALPAFDGRKNLYSPVEFENNKLELFVNLPISTAKLPLGEIDGTPEKRQQCKLFRVNIKLASKLEGRELSNYLSKEGEDWVPLPQDYLHALDVVLRESPTEKCIPVGRSLYSSSMGGIKDIGGGAIGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGIIPYLQKRLEFLHDLPRRKTRGLVGEEKKEVEKALKNIRVFVCHRETDQRYRVCSLTDEATENLWFRDRDGKDLRLVDYFKDHYNHDIQFRNLPCLQISKSKPCYLPMELCVVCEGQKFLGKLSDDQTAKILKMGCQRPKERKAIINGVMGGSVGPTSGNNGREFKLHVSREMTQLNGRVLQPPKLKLGNGGHVTDLTPSRHDRQWNFLDSHVFEGTRIERWALISFGGTPDQRSYIPRFINQLSQRCEQLGIFLNKNTILSPQFEPIQVLNNVSVLESKLRKIHRAASNNLQLLICVMERKHRGYADLKRIAETGIGMVNQCCLYSNLSKLGSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFESDDPAIFLGADVTHPHPLDDFSPSIAAVVGSMNWPAANKYISRMRSQTHRQEIIQDLGEMVGELLEDFYQEVNKLPKRILFFRDGVSETQFYKVLQQELQAIRAACSRFPGYKPTITFAVVQKRHHTRLFPKETDPSSTGTQFVNENIPPGTVVDTVITHPREFDFYLCSHWGMKGTSRPTHYHVLWDENQFTSDELQTLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSDSTGFARTTTSVSRASPPLNTTPLPKLSENVKKLMFYC* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01159 1004 Pfam PAZ domain 369 491 IPR003100 GO:0005515
Eupl04g01159 1004 SUPERFAMILY PAZ domain 353 510 IPR036085 GO:0005515
Eupl04g01159 1004 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 147 965 - -
Eupl04g01159 1004 SMART Piwi_a_2 654 964 IPR003165 GO:0003676
Eupl04g01159 1004 MobiDBLite consensus disorder prediction 64 102 - -
Eupl04g01159 1004 Gene3D - 540 716 - -
Eupl04g01159 1004 CDD PAZ_argonaute_like 361 474 - -
Eupl04g01159 1004 SMART PAZ_2_a_3 366 506 IPR003100 GO:0005515
Eupl04g01159 1004 Pfam N-terminal domain of argonaute 153 297 IPR032474 -
Eupl04g01159 1004 ProSiteProfiles Piwi domain profile. 654 964 IPR003165 GO:0003676
Eupl04g01159 1004 SUPERFAMILY Ribonuclease H-like 639 965 IPR012337 -
Eupl04g01159 1004 Pfam Piwi domain 655 961 IPR003165 GO:0003676
Eupl04g01159 1004 Pfam Argonaute linker 1 domain 307 356 IPR014811 -
Eupl04g01159 1004 MobiDBLite consensus disorder prediction 1 26 - -
Eupl04g01159 1004 Gene3D paz domain 352 479 - -
Eupl04g01159 1004 Gene3D - 726 1004 IPR036397 GO:0003676
Eupl04g01159 1004 ProSiteProfiles PAZ domain profile. 366 475 IPR003100 GO:0005515
Eupl04g01159 1004 MobiDBLite consensus disorder prediction 67 81 - -
Eupl04g01159 1004 CDD Piwi_ago-like 523 963 IPR045246 -
Eupl04g01159 1004 FunFam Protein argonaute 7 353 479 - -
Eupl04g01159 1004 FunFam Argonaute 10 540 716 - -
Eupl04g01159 1004 FunFam protein argonaute 10-like 722 1004 - -
Eupl04g01159 1004 SMART DUF1785_2 306 358 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01159 Eupl-Chr4 17757524 17761585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01159 130 1004 Eukaryotic Initiation Factors Gene Family AT1G48410 41.330 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01159 K11593 - nnu:104598297 1647.48