Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01158 ATGGTGAGGAAGAGGAAGGCTGGTGAGGGGGGAGAAGAGAAGGATTGCAGTGATGGAAACATGGGATGGGACGAGGCACGGCGAGCTCGAAAGCGGTTCGTGGGGGTACGTCAAAGGCCATCAGGGCGATGGGTAGCAGAGATCAAGGATACAATTCAAAAAATAAGGCTGTGGTTGGGTACTTTCGACACGGCTGAGGAAGCAGCCAGGGCCTATGATGAGGCTGCCTGCTTGCTCCGTGGTGCCAACACCCGCACAAATTTCTGGCCATGCTCACCATCTTCTTCTTCTCATCCTCCTGCTCTTCCATCAAAGATCTCCAACCTTCTCCTTCTCAGGCTTAAAGCAAGAAATAATTCCTACTCTCCTACGTCTACTTCTTTGCCCACAAACCAGCAACAAGAAGAATATAGAGAAGAAGCAACAGAAGAAGTAGAAGAAACACAATTCACCGATTTCTTTAATGAGCCTGATGATTCCATCACCAAATACAACAACAGTATTACTACTACCGCAACTACTAGCGATTACGTAATTGCAAGTCCAGAATCCAGTTTCACCATACAAGAAGATGTTGGAGTAAGAGAGGAAGAAGGAGAAGATATTGATTTAGGGATCATGGATTTCCAATTCGTGGATGTTGTTGGATCATCTTGTTACTATTCTCCATTTGAGATTGCAGAAGAGATGGTGGAACCAATGGATCAGCAGGAGAATGGAGTAGATGAGCCATCGATGCTTAGAGAAGCCATGAAGAGAATGAAGTATGAGAGGAAATTCTCAGCTTCTCTTTATGCCTTTAATGGGATATCCGAGTGCTTAAAGTTGAAGCTTGGATCGGGAAGTGGGAAAGGAAGAGGAAGGTCTGATCACGTAACCAACCTCAGAAATACTTGTAATAGTAATCAAGATGAGGAGAAGAAAGAGGAAGGAGAAGATGTCGAGGTGCAAGTGCAGAAGCAGGAGGATGACCCACAAATTTCGTCCACCGATGTAGTATCATCATCTACTTCCTCTTCTTCTTCTTCATCTTCGACGAGCATTAACAACGACAGCGAATTATCACTTTGGAGCTCTCTTGATCTCCCCCCCATCTGTTTTGTTAATTAG 1110 0.4495 MVRKRKAGEGGEEKDCSDGNMGWDEARRARKRFVGVRQRPSGRWVAEIKDTIQKIRLWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSPSSSSHPPALPSKISNLLLLRLKARNNSYSPTSTSLPTNQQQEEYREEATEEVEETQFTDFFNEPDDSITKYNNSITTTATTSDYVIASPESSFTIQEDVGVREEEGEDIDLGIMDFQFVDVVGSSCYYSPFEIAEEMVEPMDQQENGVDEPSMLREAMKRMKYERKFSASLYAFNGISECLKLKLGSGSGKGRGRSDHVTNLRNTCNSNQDEEKKEEGEDVEVQVQKQEDDPQISSTDVVSSSTSSSSSSSSTSINNDSELSLWSSLDLPPICFVN* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01158 369 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Eupl04g01158 369 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Eupl04g01158 369 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 263 - -
Eupl04g01158 369 MobiDBLite consensus disorder prediction 321 353 - -
Eupl04g01158 369 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Eupl04g01158 369 MobiDBLite consensus disorder prediction 301 320 - -
Eupl04g01158 369 MobiDBLite consensus disorder prediction 1 21 - -
Eupl04g01158 369 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Eupl04g01158 369 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Eupl04g01158 369 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Eupl04g01158 369 MobiDBLite consensus disorder prediction 280 353 - -
Eupl04g01158 369 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Eupl04g01158 369 FunFam ethylene-responsive transcription factor RAP2-11 31 90 - -
Eupl04g01158 369 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01158 Eupl-Chr4 17749459 17750587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01158 28 117 AP2-EREBP Transcription Factor Family AT5G25190 52.222 5.96e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl04g01158 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01158 K09286 - vvi:100259331 338.576