LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl04g01155	ATGGAGAACAAAGCTGGTTCCTCCTCTGGAGAGACCTCCAACGGATTCAACGATGTCGAAGAGTTCCTCTGGGCGGATGAAACGGAGACGAACATGTCGTGGGACCGATTCAGTCAGGTTTTTGATCTCATGCAGAAGGGGAACCGAGCTTTTCGAGAGAATCGATGTGAAGAGGCTATCAATTATTACTCTAAAGCTCATAACTTTAAGCCAGGTGATCCTGTTATTCTCAGCAACCGAAGTGCTGCTTTTAGCAGGATTAGCCGATTCCTGAAAATCAGACCTGCATCTGATTCTGAATATAAACCATTGAATGGGCTGGATCCTACAACACATGCTGAACTTGCATTAAAGGATGCCGAGAAGGTGATGAACTTCCGGAGTAATTCGGCAAAATCATATTTTCTGAAGGCCAATGCTCTCATGTTGCTAGAACGATACGAGGAGGCACGGGAAACTCTTCTTTCAGGCCTTCAGGTTGATCCTCTAAGCAATCCCCTTCAGGTCTCTCTTCAGAATTTGGAGATGACATCAACTAGTGCGATCAGAAAGACAAAACACGGGAAACCACAACGTACTGATGACTTTGATTGCACTCTTTGTTTGAAGTTGTTATATGAACCTATAACAACTCCTTGTGGGCATTCTTTTTGCCGCTCGTGTCTATTTCAGTCTATGGACCATGGTAACAAATGTCCTATGTGCCGAACAGTACTATTTATTAGTCCCAAAACATATTCAATAAGTGTGGCTCTGAACAACATAATACAAAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGTCAGAGCATGACAGTTTGACAAATTTAGGTGTTGATTTGATGCCACTTTTTGTCATGGATGTCGTCCTACCGTGCCAGAAGATGTCACTCAATATATTTGAGCCCCGCTACAGACTTATGCAACCTATAATTCTCCATTGGTGGTGTTTGAAGCCTATTAGTTGCTGCTCTGCTGAGCAGCAGCTGTATTCAGGGATGTTGGGCCTGTCCTACACCTTTCAATCTCTATCCTTTTGTTATCCAGGTACAAATTATGTAGACTTATTCTCTTTTTACCTTTTAAAACAGGTGAGGAGGATAATGGAAGGAAATCATCGGATGGGAATGGTTGTCATTGATTCTGCAACCGGTTCTTTAGCTGATTTTGCTTGTGAAGTGGAAATAACGGAGTGTGAGCCACTTCTAGATGGACGCTTTTATTTAGAGGTTGAAGGTCGTCGAAGATTTCGTATCCTCAGATCTTGGGATCAAGATGGGTATCGCATTGCAGAGGTTGAATGGATTCAGGATATTTATCCACCAGAAGGGACAAGAGAGAGAGGATATTTACAGGAAATATCTAGGGATGCAGCAGACCTTGCTCGCTCAACGATAAGGCGGGCGAAAGAAGCAGCACGAACAGATAGGAGACCCAGGCGTATGGATCTTAATCAAGCTGAAGGGATGCCCGGCCCACAGGATCCTGAGCGCTTCAGTTTCTGGCTTGTTAATCTATTTAATCTGAGACCATCAGAGAGATTGGAACTCTTGCGCTTAAGAGATACACGACAGAGGATACAACGCGGGCTTATTTATTTGAAAGCCGAATAA	1614	0.4349	MENKAGSSSGETSNGFNDVEEFLWADETETNMSWDRFSQVFDLMQKGNRAFRENRCEEAINYYSKAHNFKPGDPVILSNRSAAFSRISRFLKIRPASDSEYKPLNGLDPTTHAELALKDAEKVMNFRSNSAKSYFLKANALMLLERYEEARETLLSGLQVDPLSNPLQVSLQNLEMTSTSAIRKTKHGKPQRTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDHGNKCPMCRTVLFISPKTYSISVALNNIIQKNFPEEYAERKSEHDSLTNLGVDLMPLFVMDVVLPCQKMSLNIFEPRYRLMQPIILHWWCLKPISCCSAEQQLYSGMLGLSYTFQSLSFCYPGTNYVDLFSFYLLKQVRRIMEGNHRMGMVVIDSATGSLADFACEVEITECEPLLDGRFYLEVEGRRRFRILRSWDQDGYRIAEVEWIQDIYPPEGTRERGYLQEISRDAADLARSTIRRAKEAARTDRRPRRMDLNQAEGMPGPQDPERFSFWLVNLFNLRPSERLELLRLRDTRQRIQRGLIYLKAE*	538

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl04g01155	537	Gene3D	-	349	438	IPR046336	-
	Eupl04g01155	537	SMART	ring_2	198	235	IPR001841	-
	Eupl04g01155	537	Gene3D	Tetratricopeptide repeat domain	38	177	IPR011990	GO:0005515
	Eupl04g01155	537	Gene3D	-	474	536	-	-
	Eupl04g01155	537	PANTHER	RING FINGER PROTEIN 127	30	535	-	-
	Eupl04g01155	537	SUPERFAMILY	PUA domain-like	360	534	IPR015947	-
	Eupl04g01155	537	MobiDBLite	consensus disorder prediction	472	493	-	-
	Eupl04g01155	537	SUPERFAMILY	TPR-like	41	170	IPR011990	GO:0005515
	Eupl04g01155	537	SUPERFAMILY	RING/U-box	192	260	-	-
	Eupl04g01155	537	ProSiteProfiles	Zinc finger RING-type profile.	198	236	IPR001841	-
	Eupl04g01155	537	SMART	lon_5	334	536	IPR003111	-
	Eupl04g01155	537	Pfam	Zinc finger, C3HC4 type (RING finger)	198	235	-	-
	Eupl04g01155	537	CDD	RING-HC_LONFs_rpt2	195	239	-	-
	Eupl04g01155	537	ProSiteProfiles	Lon N-terminal domain profile.	279	536	IPR003111	-
	Eupl04g01155	537	SMART	tpr_5	131	164	IPR019734	GO:0005515
	Eupl04g01155	537	SMART	tpr_5	40	73	IPR019734	GO:0005515
	Eupl04g01155	537	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	183	278	IPR013083	-
	Eupl04g01155	537	Pfam	ATP-dependent protease La (LON) substrate-binding domain	282	535	IPR003111	-
	Eupl04g01155	537	ProSitePatterns	Zinc finger RING-type signature.	213	222	IPR017907	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl04g01155	Eupl-Chr4	17628198	17643301	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl04g01155	181	239	C3H Transcription Factor Family	AT1G74990	35.484	2.55e-08	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl04g01155	-		-	msin:131219142	685.641