Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01145 ATGGAGTGTAAGGATAGTCTTCCGGGAAAAGATGGTGGTGGTAATGATATTCCCTTTGTTGATCGCAGCAAAGTGAGGATTCTACTGTGCGAAAAGGATGTTAAGAGCTCTGAAGAAGTTTTTGAACTTCTTTGCAAATGCTCTTATCAAGTAACTTCAGTGAGGACACCAAGACAGGTGATTGATGCACTTAACGCAGAGGGGCCTGATATCGATATCATACTTGCTGAAGTTGATCTTCCAATAGCCAAAGGCTTCAAGATGTTGAAGTACATTATGCGAGATAAAGAGTTACGGCGCATTCCCATCATCATGATGTCCGCCCAAGATGATGTTTCTGTCGTTGTCAAGTGCTTGAGACTTGGAGCAGCTGACTATCTTGTGAAGCCGTTACGCACAAATGAGCTATTGAACTTGTGGACTCACATGTGGAGAAGAAGGCGCATGCTTGGACTAGCAGAGAAGAACATCTTGAATTACGACTTTGATCTGGTAGCATCAGACCTCAGTGATGCTAATACAAATAGCACTACTCTATTCTCAGACGACACAGATGACAAGTCCCGGAAGAGCACGGCTCCAGAAATGAGCATTTCAAATCATCAGGAAGATGAACCCAAAGCTGCTGTCTCTGTGGAGCCTTCACTTAAGAGCTCTTCAGAACATCACCCTGATATACCAGGGCCCAGAGACTGGCCAGCCGGACAAATTTCATCATGTCCTAAGAAGAGCGAACTCAAGGTTGGAGAGTCTTCAGCCTTCTTTACGTATGTCAAATCAAGTGTGGCCCCATGCAACTCGCAAATGGCTGGCTGTGTAGATGAAAGTGCTGCCAAGTCGGAACACTCGAGCAGAGAAGAGAAGCTTCTGGCTTGGCGTAAACAAGTAGATGCTGATTCTCAGATACGTGAAACTAGAGAAGCATGGGAAAACTATGACTGTAGAAATGGTTTTCCAATTAGAGACAATGGCCGTGAGACCACTTATGCCGAGGGGCCATTTACTCCTCCCATGCCATTAGAGTTGCCAGAAGGAAGCAATTCAAAGGACGAGGAACTGTCTATGGTATTGTTGCATCCAAGCAATGAGGCCCAAGTTGATGTTTCGGGTGTGCCGACACTCACTCCTTTGTCCTATTATTTATCAGGAATGATTAATCAAGTTATGATACCTTCATCTGCACAACTGTATCAAGGGAACCTGCATGATTTGCCAAAGCATACTGCTTCTGCTGTGCTGCCACAGTACAATCCTCTCCAACAGTGTCCTTCTCATGTACCTGTGATGGCATCCTTCCCCTATTACCCGGTCCGTATGTGTCTGCAACCAGGACAAATGCCTGCAACCAACCTGTGGCCATCAATTGTGAACTCATCTGCCACTGAAGTAAAACCGTCCCGAATTGAGAGAAGAGAGGCGGCACTGATCAAGTTTAGGAAGAAGAGGAAAGACCGATGTTTTGACAAGAAGATCAGGTATGCCAATCGGAAGCGACTGGCTGAGAGAAGGCCCCGTGTGCGGGGCCAGTTTGTGAAGCAGGTGAATGGTGTAGATGTTGATCTTAATGGCCAACCTGCTGCTGTTGATGATTCTGATGAGGATGAAGAAGGGGATGAAGATGAGGGGGAGCTCATATCTAGGGATTCTTCTCTTGAGGGTGATGCTTCAGGATATTAA 1677 0.4603 MECKDSLPGKDGGGNDIPFVDRSKVRILLCEKDVKSSEEVFELLCKCSYQVTSVRTPRQVIDALNAEGPDIDIILAEVDLPIAKGFKMLKYIMRDKELRRIPIIMMSAQDDVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYDFDLVASDLSDANTNSTTLFSDDTDDKSRKSTAPEMSISNHQEDEPKAAVSVEPSLKSSSEHHPDIPGPRDWPAGQISSCPKKSELKVGESSAFFTYVKSSVAPCNSQMAGCVDESAAKSEHSSREEKLLAWRKQVDADSQIRETREAWENYDCRNGFPIRDNGRETTYAEGPFTPPMPLELPEGSNSKDEELSMVLLHPSNEAQVDVSGVPTLTPLSYYLSGMINQVMIPSSAQLYQGNLHDLPKHTASAVLPQYNPLQQCPSHVPVMASFPYYPVRMCLQPGQMPATNLWPSIVNSSATEVKPSRIERREAALIKFRKKRKDRCFDKKIRYANRKRLAERRPRVRGQFVKQVNGVDVDLNGQPAAVDDSDEDEEGDEDEGELISRDSSLEGDASGY* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01145 558 Pfam Response regulator receiver domain 27 138 IPR001789 GO:0000160
Eupl04g01145 558 MobiDBLite consensus disorder prediction 527 545 - -
Eupl04g01145 558 ProSiteProfiles CCT domain profile. 471 513 IPR010402 GO:0005515
Eupl04g01145 558 ProSiteProfiles Response regulatory domain profile. 26 144 IPR001789 GO:0000160
Eupl04g01145 558 SMART REC_2 25 140 IPR001789 GO:0000160
Eupl04g01145 558 MobiDBLite consensus disorder prediction 175 239 - -
Eupl04g01145 558 Pfam CCT motif 471 513 IPR010402 GO:0005515
Eupl04g01145 558 Gene3D - 25 221 - -
Eupl04g01145 558 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 207 IPR045279 GO:0009736
Eupl04g01145 558 MobiDBLite consensus disorder prediction 517 558 - -
Eupl04g01145 558 FunFam Two-component response regulator-like APRR1 25 267 - -
Eupl04g01145 558 SUPERFAMILY CheY-like 20 150 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01145 Eupl-Chr4 17503064 17510906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01145 2 557 Response Regulator Gene Family AT5G61380 45.963 4.77e-163 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Eupl04g01145 Response_reg 8.7e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01145 K12127 - ming:122086466 716.457