Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01140 ATGGCTGCTCGGGTACTAAAGGTGGCACAGGACGGGAGTGGAGATTATGGGACGGTTCAGGAAGCGATCGACGCGGTCCCACTCTGCAACACATGCCGCACGGTGATCCGCGTCGCACCGGGTGTTTACAAGCAGCCGGTGTACGTTCCCAAGACCAAGAACCTCATCACCCTCGCTGGGTTACGCCCCGAGGACACCGTCCTTACCTGGAATAACACCGCCACCAAAATCGATCACCACCAGGGTTCTCGCGTAATCGGAACTGGGACGTTTGGATGCGGGAGTACCATTGTCGAGGGTGAGGATTTCATAGCTGAGAATATTACATTTGAGAACTCCGCTCCTGAGGGTTCGGGTCAAGCCGTGGCAATTAGAGTAACTGCTGATCGTTGTGCGTTCTATAATTGCAGGTTTCATGGGTGGCAGGATACACTGTATTTACATCATGGAAAACAGTATTTGAAAGATTGCTATATTGAAGGAAGCGTGGACTTCATCTTTGGGAATAGTACCGCTCTTTTGGAACATTGCCATATCCACTGCAAGTCAGCGGGATTCATAACTGCACAAAGTAGGAAATCTTCTCAGGAGTCAACTGGCTATGTGTTCCTGAGATGTGTGATTACTGGCAACGGAGGGACTTCATATTCATATCTTGGGCGGCCTTGGGGACCCTTTGGAAGGGTGGTATTTGCATACACATGGATGGACGCCTGTATTAAACCTGTGGGATGGAATAACTGGGGCAAATCCGAAAATGAAAGAAGTGCTTGCTTTTATGAGTACAGGTGTTTAGGTCCAGGTAGTTGCTCCCCGACACGGGTAACATGGGCCCGAGAACTGGTGGATGAAGAAGCAGAACAGTTCCTCATGCATTATTTTATTGACCCGGATGCTGAAAGGCCATGGCTGGCCCAGAGAATGGCATTGAAGATACCATTCTCTGCTTAG 951 0.4974 MAARVLKVAQDGSGDYGTVQEAIDAVPLCNTCRTVIRVAPGVYKQPVYVPKTKNLITLAGLRPEDTVLTWNNTATKIDHHQGSRVIGTGTFGCGSTIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFHGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQESTGYVFLRCVITGNGGTSYSYLGRPWGPFGRVVFAYTWMDACIKPVGWNNWGKSENERSACFYEYRCLGPGSCSPTRVTWARELVDEEAEQFLMHYFIDPDAERPWLAQRMALKIPFSA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01140 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Eupl04g01140 316 SUPERFAMILY Pectin lyase-like 2 302 IPR011050 -
Eupl04g01140 316 Gene3D - 2 310 IPR012334 -
Eupl04g01140 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 3 303 - -
Eupl04g01140 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Eupl04g01140 316 FunFam Pectinesterase 2 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01140 Eupl-Chr4 17442525 17451649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01140 4 309 Carbohydrate Esterase AT5G47500 37.261 6.29e-67 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01140 K01051 - nnu:104598168 616.305