Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01136 ATGGCCTCTCTCTTCTCCCTCTCCTCTTCTTCTTCCTTCCTCTCCTCTGCAAAGCCCCTTAAACCCTTCTCTTCTCAGAAAAAGAGACCAACCCTCCATCTCACAGGGCCTCTTACAGTAAAATCCCTCTTGTCGCCGGCAACTGACACACCTTCTCAGGCTGTCCAAAGCTTCTGGCAGTGGCTGTGTGACAAAGGAGTAATATCGGTTAATTCTCCGGCCGTGAAGCCTGGAATTGTGCCAGAAGGATTGGGACTGATTGCCCAGAGGAACATATCTCGGAACGAGGTGGTTGTGGAAGTACCCAAGAAGTTTTGGATAAATCCCGACACCGTCGCCGCTTCGGAGATCGGGAAGGTCTGCGGTGGGCTGAAGCCGTGGGTTTCAGTAGCTCTGTTCCTTCTGAGAGAGAAGTCAAGGAAGGATTCTCCATGGGGTAGTTACCTTGACATACTTCCAGAGACCACGAATTCCACTATATATTGGTCAGAAGAGGAGCTCTCTGAGCTACAAGGCACTCAACTATTGAGAACAACCTTGGGTGTGAAAGAATATGTGCGGAGTGAATTTCTCAAGGTCGAAGAAGAAGTAATACTCCCTCATAGGCATCTGTTCCCTTCTCCTATTACATTGGATGACTTCCTATGGGCATTTGGGATACTCAAGTCAAGGGCATTTTCACGCCTTCGTGGCCAAAATCTTGTTCTAATCCCTCTCGCAGACTTGATCAACCACAGTTCCAGCATAACTACAGAAGATTCTGCTTGGGAGATCAAAGGAGGAGGTCTCTTCTCTAGGGATCTCCTGTTTTCATTGCGAACCCCAGTTTCTGTTAAGGCTGGTGAGCAGGTACTCATCCAATATGATCTGGGGAAGAGTAATGCTGAGTTCGCATTGGATTATGGGTTTATTGAATCAAGGTCAGATCGTAATTCATATACTCTTACTCTAGGGATTTCTGAGTCAGACCCATTTTTCGGGGACAAGCTGGACATTGCTGAGTCCAACGGTCTGGGAGAAACTGAATACTTCGACATTGTTCTAGACTGTGCTCTTCCCCCCTCACTGCTTCCATATCTGCGGCTAGTAGCTCTAGGGGGAACGGATGCCTTCCTCTTGGAATCCATTTTCAGAAATTCAGTTTGGGGTCACCTTGAATTGCCCGTTAGCCGTGCTAATGAGGAGCTCATATGCCGAGTAGTCAGAGATGCCTGCAAAACTGCGCTTTCTAGCTATCACACCACCATCGAAGAGGATGAGAAGCTGTTGGAAGGGGGGAACCTGGACCCAAGACTTCAAATAGCAGTTGGAATAAGAGCTGGGGAGAAAAAGGTTTTGGACCAGATTGATGGGATTTTTAAAGACAGGGAGCTGGAGTTAGATGAGCTGGAATACTACCAAGAGAGGAGGCTCAAGGATCTGGGTCTGGTTGGAGAGCAAGGTGATATCATCTTCTGGGAGCCCAAGTAG 1470 0.4803 MASLFSLSSSSSFLSSAKPLKPFSSQKKRPTLHLTGPLTVKSLLSPATDTPSQAVQSFWQWLCDKGVISVNSPAVKPGIVPEGLGLIAQRNISRNEVVVEVPKKFWINPDTVAASEIGKVCGGLKPWVSVALFLLREKSRKDSPWGSYLDILPETTNSTIYWSEEELSELQGTQLLRTTLGVKEYVRSEFLKVEEEVILPHRHLFPSPITLDDFLWAFGILKSRAFSRLRGQNLVLIPLADLINHSSSITTEDSAWEIKGGGLFSRDLLFSLRTPVSVKAGEQVLIQYDLGKSNAEFALDYGFIESRSDRNSYTLTLGISESDPFFGDKLDIAESNGLGETEYFDIVLDCALPPSLLPYLRLVALGGTDAFLLESIFRNSVWGHLELPVSRANEELICRVVRDACKTALSSYHTTIEEDEKLLEGGNLDPRLQIAVGIRAGEKKVLDQIDGIFKDRELELDELEYYQERRLKDLGLVGEQGDIIFWEPK* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01136 489 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 305 470 - -
Eupl04g01136 489 Pfam SET domain 83 288 IPR001214 GO:0005515
Eupl04g01136 489 SUPERFAMILY SET domain 52 309 IPR046341 -
Eupl04g01136 489 Gene3D - 305 470 IPR036464 -
Eupl04g01136 489 Gene3D set domain protein methyltransferase, domain 1 51 304 - -
Eupl04g01136 489 MobiDBLite consensus disorder prediction 1 29 - -
Eupl04g01136 489 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 312 486 IPR036464 -
Eupl04g01136 489 ProSiteProfiles SET domain profile. 65 289 IPR001214 GO:0005515
Eupl04g01136 489 PIRSF RMT_SET 1 489 IPR011192 GO:0009507|GO:0030785
Eupl04g01136 489 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 1 489 IPR011192 GO:0009507|GO:0030785
Eupl04g01136 489 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 52 441 - -
Eupl04g01136 489 Pfam Rubisco LSMT substrate-binding 321 446 IPR015353 -
Eupl04g01136 489 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 51 303 - -
Eupl04g01136 489 CDD SET_RBCMT 74 304 IPR044431 GO:0016279|GO:0018022
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01136 52 247 NAC Transcription Factor Family AT3G56570 26.699 2.18e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl04g01136 SET 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01136 K00592 - ming:122076876 746.117