Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01135 ATGAAGAGAGCAACTCTGATAAAGCTTTCTTCCCTTAGATATCCATCTCATATCTCCATATTCTCAATCACATCCTCTCCATTCTCTTCATCATCAAATTCAGCTTCACAATCTCCGTCTCCATCTTCGTCACAATCTTCTACATTCATAGTAGACTACTTTGTCCGCTCCTTTGGTTACTCCAGAGAAACAGCACTCAAGGCATCAAAACCACTCCGCCATATCAAATCCCCAGAAAAACTCGACTCAGTCATCGCTTTCCTCCGCCACATCGGCCTCTCCCAATCCCAGCTCGCCTCCGCCGTTCTCCGTCGCCCCGTCATCCTCACCTCTAACATCCAATCCAATCTCCTCCCAAAAATTAATCTCCTCCAATCCCTTGGCCCCTCTCGCAAAGAACTCGCTGACCTTGTCGCCTCCTCCACCACTTGCTTTGGCAACAACTTCCATCGCCGACTCCTTCCCTCTTTCAATTTCCTCCGAAAAATCCTACAAGATGACAAGAAGGTTCGGCTCGCTATCAAGCGCTGCCCCTGGATCCTCACTAATGACCCAGACAAGACCCTATCGAGAAATTTTGAATTCTTACGGGAAAAGGGTCTCGATTTGTCTTCGATATCTTCGCTTGTTAATAAGTCCCCGGTCATTTTGACTGTCAGCTTACAGCAGTTGTATTCAGCTTGTAGGACTGTAGAGGAAATAGGGTTGAGTCCTAAAGATGCGTATTTTGGTGATGCGCTCCATGTGGTGACGTCTATGCCAAAGGAGAATCTTTGGAGGAAATTGAAGATTCTGAGGAGTTTTGGATTTGAAGATTCTTCTGTTTCCCCGTTGTTCAGGTGGATGCCGTCATTTTTTAGATTGAATGATGGGAACGTGAAGAAGAAGTTGGATTTCTTTGTCAATACGGTGGGTTATGATCCCCCAAAGCTGCTGAAATATCCCTTGCACCTGTCTCTTAGTCTGGAGAGGAGGTTGCTACCCCGGTACAGATTGATTTGCAATCTACAATCTAAAGGATTGGTCCCAGATGAAGTTAATTTTGCCAAAGTATTTGTCATGTCTGAGGTGAGTTTTGTCAATGAGTACGTTCACAAGTTCAAGGATGAAGTTGGGTTGGATCTGCTCAAAGCTTACAAGGAGTGTACAGGGGAATTCTGA 1161 0.4539 MKRATLIKLSSLRYPSHISIFSITSSPFSSSSNSASQSPSPSSSQSSTFIVDYFVRSFGYSRETALKASKPLRHIKSPEKLDSVIAFLRHIGLSQSQLASAVLRRPVILTSNIQSNLLPKINLLQSLGPSRKELADLVASSTTCFGNNFHRRLLPSFNFLRKILQDDKKVRLAIKRCPWILTNDPDKTLSRNFEFLREKGLDLSSISSLVNKSPVILTVSLQQLYSACRTVEEIGLSPKDAYFGDALHVVTSMPKENLWRKLKILRSFGFEDSSVSPLFRWMPSFFRLNDGNVKKKLDFFVNTVGYDPPKLLKYPLHLSLSLERRLLPRYRLICNLQSKGLVPDEVNFAKVFVMSEVSFVNEYVHKFKDEVGLDLLKAYKECTGEF* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01135 386 PANTHER CGI-12 PROTEIN-RELATED 44 368 IPR003690 GO:0003690|GO:0006355
Eupl04g01135 386 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Eupl04g01135 386 SMART mt_12 171 202 IPR003690 GO:0003690|GO:0006355
Eupl04g01135 386 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Eupl04g01135 386 SMART mt_12 207 237 IPR003690 GO:0003690|GO:0006355
Eupl04g01135 386 SMART mt_12 64 94 IPR003690 GO:0003690|GO:0006355
Eupl04g01135 386 SMART mt_12 309 339 IPR003690 GO:0003690|GO:0006355
Eupl04g01135 386 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Eupl04g01135 386 Gene3D Transcription termination factor 3, mitochondrial 140 370 IPR038538 -
Eupl04g01135 386 FunFam Mitochondrial transcription termination factor-like 149 371 - -
Eupl04g01135 386 Pfam mTERF 85 169 IPR003690 GO:0003690|GO:0006355
Eupl04g01135 386 Pfam mTERF 168 240 IPR003690 GO:0003690|GO:0006355
Eupl04g01135 386 Pfam mTERF 252 359 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01135 Eupl-Chr4 17406276 17413017 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Eupl04g01135 mTERF 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01135 K15031 - ming:122068738 344.739