Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01128 ATGGGTCGATCTCCTTGCTGTGAGAAGGTGGGCTTGAAAAAAGGTCCATGGACCCCAGAAGAAGATCAGAAGCTCTTAGCTTACATTGAAGAACATGGACATGGAAGCTGGCGAGCTTTGCCTGCTAAAGCCGGTCTTCAAAGGTGTGGGAAGAGCTGTAGACTAAGGTGGACTAACTATCTTAGACCTGATATTAAGAGAGGAAAATTCAGTTTACAGGAAGAACAAACCATCATTCAACTCCATGCTCTTCTAGGGAACAGGTGGTCGGCCATAGCTTCGCACTTGCCCAAGAGAACAGATAACGAGATCAAGAATTATTGGAACACCCATCTCAAGAAACGATTGGCAAAGATGGGTATCGACCCAGTGACCCACAAGCCCAAGAGCGACGCCCTAAGCTCGGTCGACGGTCAATCCAAGAACGCAGCCAACCTTAGCCACATGGCTCAGTGGGAGAGCGCTCGTCTGGAAGCCGAAGCTAGATTGGTCAGAGAGTCAAAGCTTCGGTCCACTTCCTTCCAACATCAACTCGGCTCGTCCGCTTCGAGCTCGATGACTCAGTTGCTGAACAAAACTTCTGCTCCAACTACGCAGCCGCTTTGTTTGGACGTCCTTAAAGCTTGGCAAGGAGTCTGGTTAAAGTCAACGAAAGGTGGCCATGATCTTGAATCTCCAACGTCTACATTGAGCTTCTCCGAGAATACACTTCCATTACCAACCGTTGGATTCAGCGATAATCCAACAGGTGCGATCGAGTTCGTTGGCGATTCGGGTACTTCTGAAGGAGGAATAGTAAAAGAAGAAGGTGAAGAAGAAATGAAAAGCTTCGGAAAATACAAAGAGAGGATGGAGAATTCAGTGAGCTTCACTACAGGCCTTCATGACGTTGCATTTGCTGTGGAAGACCCATGTCCATGGACCCCGGAATCGTCGAAAACTAGTCATGGGCACATAACCGCTACGAATTTCATTGATGGGTTCACTGATCTTCTTTTAGATAATTCTGATCATGATCATAATTCATCAGACGGCAGTGGAGATTCCGATAATGCCGACGGAACCGACGACTACGAGGAGAGCAAGAATTACTGGAACAACATACTCAACTTGGTGAATTCTTCACCATCTGATTCACCTGTGTTTTAG 1149 0.4708 MGRSPCCEKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKSDALSSVDGQSKNAANLSHMAQWESARLEAEARLVRESKLRSTSFQHQLGSSASSSMTQLLNKTSAPTTQPLCLDVLKAWQGVWLKSTKGGHDLESPTSTLSFSENTLPLPTVGFSDNPTGAIEFVGDSGTSEGGIVKEEGEEEMKSFGKYKERMENSVSFTTGLHDVAFAVEDPCPWTPESSKTSHGHITATNFIDGFTDLLLDNSDHDHNSSDGSGDSDNADGTDDYEESKNYWNNILNLVNSSPSDSPVF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01128 382 CDD SANT 69 112 IPR001005 -
Eupl04g01128 382 SMART sant 66 114 IPR001005 -
Eupl04g01128 382 SMART sant 13 63 IPR001005 -
Eupl04g01128 382 CDD SANT 16 61 IPR001005 -
Eupl04g01128 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 194 - -
Eupl04g01128 382 MobiDBLite consensus disorder prediction 336 360 - -
Eupl04g01128 382 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Eupl04g01128 382 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl04g01128 382 Gene3D - 13 66 - -
Eupl04g01128 382 FunFam MYB-related transcription factor 13 66 - -
Eupl04g01128 382 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Eupl04g01128 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl04g01128 382 FunFam MYB transcription factor 69 116 - -
Eupl04g01128 382 Gene3D - 69 116 - -
Eupl04g01128 382 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl04g01128 382 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl04g01128 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01128 Eupl-Chr4 17185126 17187992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01128 1 382 MYB Transcription Factor Family AT3G01140 55.297 1.84e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl04g01128 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01128 K09422 - nnu:104598084 588.186