Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01122 ATGGCTTCGGATTGCTTTAAACGAGCTCTTCCTGACCTTCAGACCAGTGGGAACTCCGAAACCCTTCATGGGTATTTGGATCGATGCAAGAAACTTGAATTCCAGTCTAGGACTGGGGCTTTCGATTTGTCCGACTGGGTCTTAAATGGGTTTCAAGGAAAATCTCCGGAACTCGCTGAATTTATAGGTTCAGTCCAGATTAAAAAATCAGAGAATCGTGGTCGTGGGCTATTTGCAACGAAGAACATCCAAACTGGGACTTTGTTGCTAGTCACCAAGGCAGTTGCCACCGATAGGGGCATATTGCCGGAATCCAGTGAAGAATCGGGCAATAGTGCTCGATTGGTCATGTGGAAGGACTTCATAGGTAAAGTTCTTGATGCCGCCGCAAAATGCAACAAGACCCATAATTTGATTTGTACATTATCGGCAGGAGAAGATGAAGAGGGCCTCGAAGTTCCCGATATAAATCTCTTTAGACCTGACACTGAGGAGAGCTTCTCTCCAAAGGAGAAACCTGAAATGGGTAGGATTTTAAACATCTTGGATGTGAATTCTCTAACTGAAGATGCGATTTCAGCTAAAGTTCTTGGAAAAAACAGTGATTACTATGGCGTTGGGTTATGGATCTTGGCTTCCTTCATCAATCACTCATGCAATCCTAACGCAAGGCGCTTGCACATTGGAGATCATGTGATAATTCATGCTTCTAGAGATGTCAAGGAAGGAGAAGAGATAACGTTCGCCTATTTTGACGTGCTTTCACCATTGAAGAAGCGAAAGGAGATGTCTAAGACATGGGGATTTAATTGTAATTGTAAGAGGTGCAGGTTTGAGGAGGAAATAGGCTATAGAGAGGGGTTCAGAGAGATTGAGATAGCTCTTGATTGTGGGTCAGATATGGGTGGTGGTGTTGTAAGATTGGAGGAAGGGATGAGAAGATGGATGGTGAAAAGGAGGGAGAAGGATTACTTGAGAGCATCGTTTTGGGCCGTGTACTCGGGAGCTTTCAAGTCAGAGAAGTCAATGAGGAGGTGGGGGAGAAGGATGCCGGCCGCAGATGCTATAGTGGATAGTGTTGCAGAGGTGGTGGGTGGTGATGAGAGGGTGTTGAAAGTGATTGTAGAGGGGTTGAGGAAAAGTGGTGGTGGAATGGTGGAGATGGAGAGAGCAATGAAGTTAGGGAGAAGTGCGTATGGGAGAGTGGTGAAGAAACAGGCAATGAGAGCTCTCCTTGAGCTTAGCATTCATGACCAAAGCTATTAG 1266 0.455 MASDCFKRALPDLQTSGNSETLHGYLDRCKKLEFQSRTGAFDLSDWVLNGFQGKSPELAEFIGSVQIKKSENRGRGLFATKNIQTGTLLLVTKAVATDRGILPESSEESGNSARLVMWKDFIGKVLDAAAKCNKTHNLICTLSAGEDEEGLEVPDINLFRPDTEESFSPKEKPEMGRILNILDVNSLTEDAISAKVLGKNSDYYGVGLWILASFINHSCNPNARRLHIGDHVIIHASRDVKEGEEITFAYFDVLSPLKKRKEMSKTWGFNCNCKRCRFEEEIGYREGFREIEIALDCGSDMGGGVVRLEEGMRRWMVKRREKDYLRASFWAVYSGAFKSEKSMRRWGRRMPAADAIVDSVAEVVGGDERVLKVIVEGLRKSGGGMVEMERAMKLGRSAYGRVVKKQAMRALLELSIHDQSY* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01122 421 ProSiteProfiles SET domain profile. 63 251 IPR001214 GO:0005515
Eupl04g01122 421 SMART set_7 63 257 IPR001214 GO:0005515
Eupl04g01122 421 Pfam SET domain 74 250 IPR001214 GO:0005515
Eupl04g01122 421 SUPERFAMILY SET domain 64 276 IPR046341 -
Eupl04g01122 421 Gene3D SET domain 174 281 IPR046341 -
Eupl04g01122 421 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 2 415 - -
Eupl04g01122 421 CDD SET_SMYD 200 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01122 Eupl-Chr4 17114073 17115848 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl04g01122 SET 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01122 - - nnu:104597947 627.091