Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01102 ATGGGAAGGGTTAAGCTAAAGATAAAGAGATTAGAGAATACGAGCGGCCGGCAAGTGACCTATTCAAAACGAAGGGCCGGGATCTTGAAGAAAGCTAGGGAGTTATCGATATTGTGTGACATAGACATTGCCCTTCTCATGTTTTCACCAACTGGCAAGCCCACATTATGCCTTGGAGAGCACAGCAACATTGAAGAGGTTATTGAAAAGTTCGCTCAATTAACTCCACAGGAGAGGGCAAAAAGGAAATTGGAGAGCCTCGAGGCACTAAAGAAAACATTTAAGAAGTTGGATCATGATGTAAATATACAAGACTTTTTGGGTACAAGGTATGGAAAACCTAATTTTTCTGACATTTCTTTTTATTTATTAGAAAAAAATCTGATATTGCCCCTTTTGATTTGTTGCAGTACTGAAACAGTTGAGGAACTGACTAACCAATGTAGGCTATTGCAAGCTCAACTATCAGAGATGCATAAGAGGCTGAGTTGTTGGACTGATCCAGAGAAGATCAACAATATAGAACATCTCAATGCAATGGAAGAATCTCTCAAGGAATCACTAAATCGAATTCGAACACATAGGGAAAATTTTGGGAAGCAACTTATTTCACTAGAATGCACTAGTCAGTTCCAGAATGGGATGCATTTACCCTTGGGAATGGGTGGAGAGCAACAAGCCCAACCCATATCATGGATTCCTGATAATGACTGTCAACATATGATGTTATCCCAGGACCCCAACTTACTGCCTCAGAGAGATGTGGAATGCTCTACAGATGTCTCCCTTCCGAGCTATTCTGGTTACTATGGAATGGGCAAACAAGCAGAGATCAATAGTGCAGGGCAAGAAGGTGGTGCCTTGAATGAATTAAGTAGAACTGCCTGCTTGAGGCTGCAACTGGGTGGCCAGTACCCTTACCCGCCGCCATACAGTTTCAATTTGTTGGGTGATAAGAAATTCAAGCCTGAGGTCAAAATGAACTTACAAGAACCCCATGTGGATTATCAAGTTAGCAGCAGCTTTGAACCGCCCAGGCCCAGTTATGACACCAGCCATAGTAGTTGGGCTTCTACATCTGGACCTTGTGCCCTTTCCATGTTTGACGAGCACTCGTATCCCCAGCGACCGAATTGA 1137 0.4301 MGRVKLKIKRLENTSGRQVTYSKRRAGILKKARELSILCDIDIALLMFSPTGKPTLCLGEHSNIEEVIEKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGTRYGKPNFSDISFYLLEKNLILPLLICCSTETVEELTNQCRLLQAQLSEMHKRLSCWTDPEKINNIEHLNAMEESLKESLNRIRTHRENFGKQLISLECTSQFQNGMHLPLGMGGEQQAQPISWIPDNDCQHMMLSQDPNLLPQRDVECSTDVSLPSYSGYYGMGKQAEINSAGQEGGALNELSRTACLRLQLGGQYPYPPPYSFNLLGDKKFKPEVKMNLQEPHVDYQVSSSFEPPRPSYDTSHSSWASTSGPCALSMFDEHSYPQRPN* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01102 378 Coils Coil 77 97 - -
Eupl04g01102 378 Coils Coil 141 161 - -
Eupl04g01102 378 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl04g01102 378 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Eupl04g01102 378 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Eupl04g01102 378 MobiDBLite consensus disorder prediction 336 355 - -
Eupl04g01102 378 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Eupl04g01102 378 Coils Coil 177 197 - -
Eupl04g01102 378 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Eupl04g01102 378 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 224 - -
Eupl04g01102 378 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl04g01102 378 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl04g01102 378 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl04g01102 378 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01102 Eupl-Chr4 16843550 16859238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01102 1 292 Type I MADS-box Gene Family AT2G03060 50.331 8.22e-98 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl04g01102 SRF-TF 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01102 - - ming:122076733 534.643