Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01100 ATGAGGATGGCCCTGCAACAGTTCACCAGTACCATCTGTCACCAAGAAACTGAAGGTACTACCAACAACTATATTATTTATGCACCAGAGAACTCCAATGGCCTCAGCAGTTCCTCTTTATCTTCTTCTCCTTCTTCAATGGGGTTGTTTGCAGATATTGGTTCTCTTTCCATTAATCCCAACTATGGAATGGCCTCAGCAGCTGGGTCTTCTTCACAAGAGAGTTATTGTTGCAAGAGATTTGAGAAGGATAATAGGAGAAGTTGTTGGACTTTTCCTTTTATGGGGACTTGCACTAGCAGCTTAGAGGATCCCCACAACAGTGATGGAGGTGATGGTAAGGGCTCTGATTCTAGTGATGGTTTTGGAGAAAACAATGCTGCCATTGAAGACAACCAGACCAACAACTTAAATGAAGAGAACCCAAATGAGAATTCTTTGAATGGTAAGGAAATAGATAGTGAGCAGTCTAAGCTTTGTGCCAGAGGGCATTGGAGGCCTGCAGAGGACACCAAGCTCAAGGAACTTGTAGCTCTCTATGGCCCTCAGAACTGGAACCTTATTGCAGAGAAGCTGGAGGGAAGATCAGGTAAGAGTTGTAGACTGAGATGGTTTAACCAGTTGGACCCAAGGATCAATAGAAGAGCTTTCAGTGAAGAAGAAGAAGAGAGGCTAATGGCTGCTCATAGATTGTATGGGAACAAATGGGCTATGATTGCTAGGCTTTTCCCTGGAAGGACTGATAATGCAGTCAAGAACCACTGGCATGTTATAATGGCTAGGAAATACAGAGAGCAGTCCAGTGCTTATAGGAGGAGGAAACTGAGTCAAGTTGTTCATCGAAAGTTGGAGGATGCAACCTTTGTCTGCAGAGATACTGCTATAAGAACAGAACCCAACAGTCTCAATCTCAGCAATAGCAGCTTTGGTAACCCATATCCATTCCCATTTCCAGCTCTCATGGGTGATGGTAGTGGAGAACATTCAATTCCAAGTTGCAGAGATGTGTTGCTTGGTTCTTCAGGCAACAACAAGCTCCATCCACACAGTGGGTTTTGTGCAGAGCAGACACCTTTTGATTTCTTCTCTGGTCCCAAGAACCATGACATGACATGCTCTTATAACCAGAACAAGCCATGGGATGGTATAAGACCTGCTTCCATCTTCTCTGGTTTCTTCCCCCATCACCCTCCACTGATGATAGGAATGCAACAGTCGAACCAACATCACCCTTCTTATTTCTCAGACTACAAAACATCAACCTCTCACATCTCAGTCACTGAAGCATCATCATCATCATCAGTTGCAGAGAATAGTGTGACCAGCCAATTTGAGACCACCATTTCACCACCCTTCATAGACTTTCTTGGGGTAGGAGCTACGTGA 1386 0.4444 MRMALQQFTSTICHQETEGTTNNYIIYAPENSNGLSSSSLSSSPSSMGLFADIGSLSINPNYGMASAAGSSSQESYCCKRFEKDNRRSCWTFPFMGTCTSSLEDPHNSDGGDGKGSDSSDGFGENNAAIEDNQTNNLNEENPNENSLNGKEIDSEQSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMAAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRKLSQVVHRKLEDATFVCRDTAIRTEPNSLNLSNSSFGNPYPFPFPALMGDGSGEHSIPSCRDVLLGSSGNNKLHPHSGFCAEQTPFDFFSGPKNHDMTCSYNQNKPWDGIRPASIFSGFFPHHPPLMIGMQQSNQHHPSYFSDYKTSTSHISVTEASSSSSVAENSVTSQFETTISPPFIDFLGVGAT* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01100 461 FunFam MYB transcription factor 215 285 - -
Eupl04g01100 461 Pfam Myb-like DNA-binding domain 162 208 IPR001005 -
Eupl04g01100 461 Pfam Myb-like DNA-binding domain 214 257 IPR001005 -
Eupl04g01100 461 Gene3D - 215 284 - -
Eupl04g01100 461 SMART sant 161 210 IPR001005 -
Eupl04g01100 461 SMART sant 213 261 IPR001005 -
Eupl04g01100 461 Gene3D - 162 213 - -
Eupl04g01100 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 263 IPR017930 -
Eupl04g01100 461 CDD SANT 165 206 IPR001005 -
Eupl04g01100 461 FunFam MYB transcription factor 162 213 - -
Eupl04g01100 461 ProSiteProfiles Myb-like domain profile. 162 208 IPR001005 -
Eupl04g01100 461 CDD SANT 216 256 IPR001005 -
Eupl04g01100 461 SUPERFAMILY Homeodomain-like 162 255 IPR009057 -
Eupl04g01100 461 MobiDBLite consensus disorder prediction 119 150 - -
Eupl04g01100 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 208 IPR017930 -
Eupl04g01100 461 MobiDBLite consensus disorder prediction 101 150 - -
Eupl04g01100 461 PANTHER MYB PROTEIN-RELATED 146 406 - -
Eupl04g01100 461 ProSiteProfiles Myb-like domain profile. 209 259 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01100 Eupl-Chr4 16802109 16804447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01100 41 274 MYB Transcription Factor Family AT1G69560 54.582 7.45e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl04g01100 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01100 K09422 - nnu:104597747 574.318