Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01091 ATGGCAGCCGAATCAGAGTCCGAAACTTCATTTCTGGAGCAACTTATAAGTTCCAGAAACAGAGATCTCTCCTTCTTTCTACCTCTCATCTTGGGTTTCTCGAGCTCCCCAAGAAGAGAATCCGACGACCCAGATCAAGAAACAGGGCGAACCCACGAGCGGATCATCCTCATCAATCCCTTAACACAGGGGATGATTGTGATAGAAAGTAGTCAAAGCTTGGACGCCTTGCTTCGTGAGGTATCAAGCAAGGAAGGGCCGTTGCCGGCATCGAAGGCGTCGATCGATGCGATGCCGAAAGTGGAGATAAAGGAAGGCGATGAGAGAGATTGGGAGTGTGCGATTTGCTTGGAGGGGTGTGAGATTGGTGGGGAAGCGAGGGAGATGCCTTGTATGCACAAGTACCACTCGAATTGTATAGAGAAGTGGTTGGGGATTCATGGGTCTTGCCCTGTTTGCAGGTTTAAGATGCCGGTTGATGAAGATGAGTGCAAGAAGAGAAGTGGTGGTGAAGAAGAGAGAGGGAGAAGGATTGAGAGGGAGATTTGGGTGAGTTTTTCCATTAATAACAGTAATAGGAGGAGGGATTCAACTTCAAGTGATTCTGATTCTTCTTCAAATCCAAGACATGAAGATGGGGTTGTTGTTGATGGATCATCAAACAATGAGGAGAATTGA 678 0.472 MAAESESETSFLEQLISSRNRDLSFFLPLILGFSSSPRRESDDPDQETGRTHERIILINPLTQGMIVIESSQSLDALLREVSSKEGPLPASKASIDAMPKVEIKEGDERDWECAICLEGCEIGGEAREMPCMHKYHSNCIEKWLGIHGSCPVCRFKMPVDEDECKKRSGGEEERGRRIEREIWVSFSINNSNRRRDSTSSDSDSSSNPRHEDGVVVDGSSNNEEN* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01091 225 SMART ring_2 113 153 IPR001841 -
Eupl04g01091 225 SUPERFAMILY RING/U-box 95 160 - -
Eupl04g01091 225 MobiDBLite consensus disorder prediction 196 210 - -
Eupl04g01091 225 Pfam Ring finger domain 112 154 IPR001841 -
Eupl04g01091 225 ProSiteProfiles Zinc finger RING-type profile. 113 154 IPR001841 -
Eupl04g01091 225 MobiDBLite consensus disorder prediction 191 225 - -
Eupl04g01091 225 FunFam E3 ubiquitin-protein ligase RNF181 78 160 - -
Eupl04g01091 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 160 IPR013083 -
Eupl04g01091 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 30 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01091 Eupl-Chr4 16690330 16691007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01091 1 212 C3H Transcription Factor Family AT1G26800 49.541 8.56e-60 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01091 - - nnu:104598113 290.041