Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01075 ATGGGCGATCACATGGTTTTGTATGTCGACCGTCTCATAACACCAGCAACCTTACAATCCATTCAAGGGGGTGAGGCTCCAGAACATGCTGGAGACGGTTCTTGTGTCCACACTGCAGTTCTGTCTCATTCTACCAGCACCAACAAGAGAGTGGAGGAAGATGAAGTCCCTGAGGAAGAAGAGCCACTTATTCAGATGCTGGAGTGCCGCATTTGCCAGGAGGAGGACCACATCAAGAACCTGGAGGCCCCTTGCGGTTGTAGTGGCAGTTTGAAGTTTGCTCACAGGAAGTGTGTTCAGCGATGGTGCAATGAAAAAGGAGATATAACTTGTGAGATCTGCCATCAGCCGTACCAGCCTGGTTATACCGCCCCACCTCCTCCACCTCTCTCTGAGGATACCACCGTCGATATCAGTGAAGGTTGGACTATTGCTGGTGCTCCTATGGATTTGCATGACCCTCGGCTCTTGGCAATGGCAGCAGCGGAGCGTCATTTTCTGGAGGCCGAGTATGATGAGTATGCCACTACAAATGCCAGTGGAGCTGCTTTTTGCCGCTCTGCTGCTCTAATTTTAATGGCGCTTCTGCTCCTGAGGCATGCATTGACAATGACCAGTGCTGATGGGGATGGTGATGATGACGCTTCGACCTTTTTCTCTCTTTTCTTGCTGCGGGCTGCTGGGTTTCTTTTGCCATGCTACATTATGGCCTGGGCCATCAGTATCTTGCAGCGTCGAAGGCAAAGACAGGAGGCAACAGCACTGACAGCGACTGAAGTTGCATTTGTGCTACAGTCGGGGCAACGAGGTCTGCAATTCACAATAGCACCAGGACCTGCAGTGACTCCTCATCAGGAGCCGCCTCAATAA 870 0.5149 MGDHMVLYVDRLITPATLQSIQGGEAPEHAGDGSCVHTAVLSHSTSTNKRVEEDEVPEEEEPLIQMLECRICQEEDHIKNLEAPCGCSGSLKFAHRKCVQRWCNEKGDITCEICHQPYQPGYTAPPPPPLSEDTTVDISEGWTIAGAPMDLHDPRLLAMAAAERHFLEAEYDEYATTNASGAAFCRSAALILMALLLLRHALTMTSADGDGDDDASTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEATALTATEVAFVLQSGQRGLQFTIAPGPAVTPHQEPPQ* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01075 289 ProSiteProfiles Zinc finger RING-CH-type profile. 61 121 IPR011016 GO:0008270
Eupl04g01075 289 Pfam Protein of unknown function (DUF3675) 120 240 IPR022143 -
Eupl04g01075 289 SUPERFAMILY RING/U-box 67 119 - -
Eupl04g01075 289 FunFam RING/FYVE/PHD zinc finger protein 57 125 - -
Eupl04g01075 289 CDD RING_CH-C4HC3_MARCH 69 115 - -
Eupl04g01075 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 123 IPR013083 -
Eupl04g01075 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 250 IPR033275 -
Eupl04g01075 289 SMART ringv_2 68 115 IPR011016 GO:0008270
Eupl04g01075 289 Pfam RING-variant domain 69 114 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01075 Eupl-Chr4 16503939 16508738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01075 68 115 C3H Transcription Factor Family AT2G37950 43.137 2.10e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01075 - - ming:122068802 445.662