Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01072 ATGGATTTAACAACCGCCACCACAACCCCAGAAACAGAAACTGAAACACCACCCACCAAACCCACCGACCACCTCCCCCACCACCATAACTCAAAGGCCTTATCCTTCACCAACGGCGCACTCAAGCGCCACCACCACCAGCATCTGCCAACAACCCCATCTGTGGTGATTTACAAAGAATGTCTCAAAAACCACGCGGCAAGCTTAGGAGGGCACGCTTTAGATGGGTGTGGAGAGTTCATGCCGTCCCCCACCGCTACCCCTGCTGATCCCACTTCGCTAAAATGCGCCGCGTGCGGATGCCACCGCAACTTCCACCGGCGTGACCGGGATGAAGGTACCCACATCATTGAATATCACCCCCATCAACTACCACCACCACGCGGTCGGAGCCCAAATTCAGCTTCCCCACCACCAATATCGTCTTCCTATTATCCTTCTGCACCGCATATGTTGCTTGCTTTGAGCGCCGGTTTATCTAATCCGCCTGATAATCATCATACGGTGAATACGACTATAACAACGACGACACCAATGACAGGAAACGCAAATGGGGGGAAGAAGCGGTTTAGGACGAAATTCAGTCAGGAGCAGAAAGAGAAGATGTACTCGTTTGCGGAGAAATTGGGGTGGAAGATGCAGAAGAGGGACGAAGGATTGGTGGAGGAGTTCTGCAATGAGATTGGGGTGGAGAAAGGCGTGGTGAAGGTTTGGATGCATAACAACAAGCACACTTTTGCGAAGAGAGATGTTAATAGTAATAGTAGTAACCCTCACTCCAACGACGACAACAACAACAACAACAACCACCACCACCACAATGATGGTAGTGATGCTCATGTTATCACTAATGGTTCTTCTTCTTCTTCTTGA 873 0.5017 MDLTTATTTPETETETPPTKPTDHLPHHHNSKALSFTNGALKRHHHQHLPTTPSVVIYKECLKNHAASLGGHALDGCGEFMPSPTATPADPTSLKCAACGCHRNFHRRDRDEGTHIIEYHPHQLPPPRGRSPNSASPPPISSSYYPSAPHMLLALSAGLSNPPDNHHTVNTTITTTTPMTGNANGGKKRFRTKFSQEQKEKMYSFAEKLGWKMQKRDEGLVEEFCNEIGVEKGVVKVWMHNNKHTFAKRDVNSNSSNPHSNDDNNNNNNHHHHNDGSDAHVITNGSSSSS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01072 290 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 246 - -
Eupl04g01072 290 NCBIfam homeobox domain, ZF-HD class 187 243 IPR006455 -
Eupl04g01072 290 MobiDBLite consensus disorder prediction 119 143 - -
Eupl04g01072 290 Gene3D - 174 248 - -
Eupl04g01072 290 SUPERFAMILY Homeodomain-like 178 248 IPR009057 -
Eupl04g01072 290 Pfam ZF-HD protein dimerisation region 56 109 IPR006456 -
Eupl04g01072 290 MobiDBLite consensus disorder prediction 1 31 - -
Eupl04g01072 290 MobiDBLite consensus disorder prediction 248 264 - -
Eupl04g01072 290 MobiDBLite consensus disorder prediction 161 183 - -
Eupl04g01072 290 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Eupl04g01072 290 MobiDBLite consensus disorder prediction 156 187 - -
Eupl04g01072 290 MobiDBLite consensus disorder prediction 247 290 - -
Eupl04g01072 290 FunFam Zinc-finger homeodomain protein 2 174 248 - -
Eupl04g01072 290 MobiDBLite consensus disorder prediction 1 16 - -
Eupl04g01072 290 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01072 Eupl-Chr4 16467731 16469251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01072 56 246 ZF-HD Transcription Factor Family AT1G69600 54.922 6.88e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Eupl04g01072 ZF-HD_dimer 5.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01072 - - nnu:104597496 342.043