Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01070 ATGGGTAGACCACCTTGCTGTGATAAAATCGGGGTGAAGAAAGGTCCTTGGACTCCAGAAGAAGATATCATCTTAGTCTCTTATATTCAAGAACATGGTCCTGGGAACTGGAGGGCTGTTCCTACTAATACTGGGTTGCTCCGATGCAGCAAGAGTTGCAGGCTTAGATGGACTAATTACCTTAGACCGGGGATCAAACGTGGTAACTTTACTGATCATGAAGAGAAGATGATAATCCACCTTCAAGCTCTTTTGGGCAATAGATGGGCTGCCATAGCTTCTTACCTCCCACAAAGAACAGACAACGACATCAAGAATTACTGGAATACCCATTTGAAAAAGAAGCTCAAGAAGCTTCAAACGAGTCTTGATGGGCATACCAGAGATGGCTTATCAGGCTTACAGTCAATCTCCAAAGGTCAGTGGGAGAGGAGGCTTCAAACTGATATACACATGGCTAGGCAAGCTCTTTATGAGGCTTTGTCTCTAGAGAAACCCAGCTATGTATCTGAATTGAAGACCTCCAATGGCTATAACACTGACATGAGACCGAGCCAACCGACAACCTACGCTTCAAGCACGGAGAACATTTCCCGGTTGCTCGAAGGATGGATGAGGAATCCACCAAAACCTACTGGATCAACCGCTGAGACTACTACTACTCAGAATTCCTTCAACTACACAATTGGGACAGACTCCACTTCTAGCGAGGAGACCCCGAACAAAGAAATTGTATCGTCCGATGCCTTCGAATCGCTCTTCGCTTTGGATTCATCCTCCCCAGATGTCTCCCAATCCGTGTCATTCGATGATCAGACTAAGCTCTTTCAAGATGAAAGCAAGCCAAATTTGGAGACCCAAGTCCCATTCTCATTGCTTGAGAAATGGCTGTTTGATGAAAGTGTTGTTCAAGGACAAGACGACCTGATTGAGATCTCACTAGATGACACTACTGCTGAGTTGTTCCCTTTGGGACTTTAG 981 0.4536 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTSLDGHTRDGLSGLQSISKGQWERRLQTDIHMARQALYEALSLEKPSYVSELKTSNGYNTDMRPSQPTTYASSTENISRLLEGWMRNPPKPTGSTAETTTTQNSFNYTIGTDSTSSEETPNKEIVSSDAFESLFALDSSSPDVSQSVSFDDQTKLFQDESKPNLETQVPFSLLEKWLFDESVVQGQDDLIEISLDDTTAELFPLGL* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01070 326 MobiDBLite consensus disorder prediction 207 241 - -
Eupl04g01070 326 FunFam Transcription factor MYB30 68 126 - -
Eupl04g01070 326 FunFam MYB-related transcription factor 13 66 - -
Eupl04g01070 326 Gene3D - 68 129 - -
Eupl04g01070 326 CDD SANT 16 61 IPR001005 -
Eupl04g01070 326 Gene3D - 13 66 - -
Eupl04g01070 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl04g01070 326 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Eupl04g01070 326 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl04g01070 326 MobiDBLite consensus disorder prediction 211 241 - -
Eupl04g01070 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Eupl04g01070 326 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Eupl04g01070 326 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl04g01070 326 CDD SANT 69 111 IPR001005 -
Eupl04g01070 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 237 - -
Eupl04g01070 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Eupl04g01070 326 SMART sant 66 114 IPR001005 -
Eupl04g01070 326 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01070 Eupl-Chr4 16438388 16440209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01070 1 300 MYB Transcription Factor Family AT5G62470 51.831 1.75e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl04g01070 Myb_DNA-binding 8.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01070 K09422 - nnu:104597487 477.248