Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01034 ATGGCGGATCTTCAGAGGAGTAGTCCGGTGGAGAGGGATGTTGAGCAGGCCATTGCAGCCCTTAAGAAAGGGGCATTTCTACTAAAGTATGGACGCAGAGGGAAGCCAAAGTTCTGCCCATTCAGGCTTGCTAATGATGAGTCGGCATTGATATGGTACGCTGGCAAAGAGGAGAAACAGCTTAAACTAAGTCATGTATCAAGGATCATACCTGGACAGCGGACTGCAATATTTCAGCGGTACCCGCGGCCTGAGAAGGAATACCAATCTTTTTCTCTTATATACAATGACAGGTCTTTGGATTTGATATGTAAGGATAAGGATGAAGCCGAAGTCTGGTTTTTTGGTCTGAAGGCATTGATTTCACGTGGTAACTACCGTAAGTGGAGAACTGAATCAAGAAGCGATAGAAAATCATTAGATGGTCCGAGTACCCATACTCAAAGAAATACTCCACTGGTTTCTGCAAGTGGCTGTAGCGATATCTTCCAAAAGGATCCTGGAGACACCCAACAAGTTCAGCTGTCTTATGAGAGCACCCCCCAAAATGGTTTTGTAAAGGCATTCTCTAATGTGATACTATATACTGCAGCGGCCAAGGGTTCTACTCAGTCTGAGTCATTTGCGAATTCTCTCAGTTCATTATCATCTGGGATTCCAGATAATTCAAATGGTCGGGGCTCTGTAGTTGATACTTTTCGAGTTAGTTTGTCGAGTGCGGTAAGCTCATCGAGCCAGGGATCTTGTCATGAAGATTTTGATGCTTTAGGCGATGTTTTCATATGGGGAGAAGGAGTTGGTGATGGGTTGCTGGGTGGTGGTATGCATAGGGTTGGAAGTTCATCCGGTACCAAGATAGATGCACTTCTGCCCAAGGCACTGGAATCAACAGTGGTGCTTGATGTTCACAATATTGCTTGTGGTGGTAGGCATGCTGTGTTAGTCACCAGACAAGGGGAGATCTTTAGTTGGGGAGAGGAGTCAGGAGGCAGGCTTGGGCATGGAGTAGAAGCTGATGTTTCCCACCCAAAGCTCATTGACACCCTCAGTGGGATGAACATTGAGGTAGTAGCATGTGGGGAGTATCATACCTGTGCTGTTACATTGTCTGGGGATCTTTACACATGGGGTGATGGTACTCACAACTTTGGTCTTCTTGGGAATGGGAGTGAAGCCAGTCACTGGATTCCAAGAAAAGTAAGTGGTGAAATGGAAGGCATACATGTTTCATCAATCTCTTGTGGACCTTGGCATACAGCTGCTGTAACATCTGCAGGCCAATTGTTTACATTTGGTGATGGAACTTTTGGTGTCCTAGGCCATGGTGATTGCAGCACCACTAGCATGCCAAGAGAAGTGGAATCTTTGAAAGGACTACGAACAGTGAGGGTAGCTTGTGGTGTTTGGCACACTGCTGCACTTGTGGAAGTTGTGGTTGGGTCTTCTAATCCTGGTAACTCTTCATCTGGAAAGCTGTTCACCTGGGGGGATGGAGATAAAGGCCGACTTGGACATGGTGATAAAGAACCTAGACTAGTTCCGGCATGTGTAGCTTCTTTGGTTAATGTAAGCTTTTGTCAAGTAGCCTGTGGTCATAACATCACAATTGCTCTTACAACCTTGGGGCGAGTATATACAATGGGGAGTACTTCTTATGGACAGTTGGGGACTCCTGAAGCTGATGGGAAGCTTCCCACTTGCATTGAGGGTAGAATAAGCAATAGTTTTGTAGAAGAGATAGCATGTGGTTCTTATCATGTTGCAGTTTTGACTTCAAAAACTGAGGTTTACACTTGGGGAAAGGGGGCAAATGGCCGATTAGGCCATGGAGACAATGATGACAGAAATACTCCTACACTTGTTAAAGCTCTAAAGGATAAACAAGTTAAGAGTGTAGTGTGTGGTTCAAATTTCACTGCTGTCATCTGTATTCATAAATGGGTGTATAGTGCTGATAACTCTGTATGCTCTGGTTGTCGTAATCCATTTGGTTTCAGGAGAAAACGTCATAATTGTTATAACTGCGGGCTAGTCTTTTGCAAAGCATGCAGCAGCAGGAAATCTCTAAAAGCTTCTTTGGCTCCAAATATTAACAAGCCTTATCGTGTGTGTGATGATTGTTTTACTAAACTTAAGAAGGCCATGGAATGTGGATCAACATCTCGATTTTCTAAGAATCAAAGTGAAAGTATACATCATATTTCCAATGAGGTGGCAGAAAAAGAGACTCAAGATCCTAGATTACATGGACAACTCTCCAGGCTTTCCTCAGTTGAATCACTGAAGCAGCCTGAAAGCAGACATTCCAAGCCCAACAGGAGCCGTATTCCTCCTATTCCGAATGGAAGTTCTCAGTGGGGAAGCTTTTACTCATCAAAATTGCCAACTTCCTTAGTTGGATCTTCAACGAAAATATTTTCTGCTTCTGTTCCTGGTTCAAGAACGGTTTCTCGGGCAACATCTCCTGTCTCGAGTAAGCCAAGTCCACCTTGTCCTGTAACACTGACCCCAACTCTTACTGTCCTTACATCTCCAGAAGTCATTGTTGATGATTCAAAGCATACGAGTGACAACCTCAGCCAAGAAATTATTAAATTGAGGGTACAGGTAGAGGATCTTACCTGCAAATCCAAACTTCTAGAAGCTGAGCTGGAAAGAACATCAAGGCAATTGAAGGGTTCCACTGCAATAGCAGGGGAAGAAACTGCAAAATGCAAGGCTGCAAAGGAAGTAATTAAATCTCTCACTTCACAGTTAAAGGATATGGCTGAAAGGGTTCCTGAAGGATCTATTACCAGCAGTAAATCACGTTCAATTGCTGGACACTCCAGTAACCTGAGCCTGTCTCCTACTGACAGCAATTTGAGCAGCCTAGTCTCTCTTGAACCTGAATCCAATGGCCACTCAGCAAATCCACTCTCATGCAAAACCAAGTTGCGAACTGAACTATCAGAGTGGGTAGTGCAAGATGAACCAGGCGTGTACTTAACTCTTTTCTCCTTGCCAGGGGGTGGCAAAGATCTTAGGAGGGTACGCTTCAGTCGCAAACGTTTCATTGAGAAACAAGCAGAAAAATGGTGGGCTGAAAACAGAGCAAAGGTATACGAACGGCACAACATCCGTAGTGCAGCGAAATCTGTCATTGGGGCTCCTTCAGTGCCACTGATTACAAACGAGAAGGATTGCAACTGA 3192 0.4452 MADLQRSSPVERDVEQAIAALKKGAFLLKYGRRGKPKFCPFRLANDESALIWYAGKEEKQLKLSHVSRIIPGQRTAIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFFGLKALISRGNYRKWRTESRSDRKSLDGPSTHTQRNTPLVSASGCSDIFQKDPGDTQQVQLSYESTPQNGFVKAFSNVILYTAAAKGSTQSESFANSLSSLSSGIPDNSNGRGSVVDTFRVSLSSAVSSSSQGSCHEDFDALGDVFIWGEGVGDGLLGGGMHRVGSSSGTKIDALLPKALESTVVLDVHNIACGGRHAVLVTRQGEIFSWGEESGGRLGHGVEADVSHPKLIDTLSGMNIEVVACGEYHTCAVTLSGDLYTWGDGTHNFGLLGNGSEASHWIPRKVSGEMEGIHVSSISCGPWHTAAVTSAGQLFTFGDGTFGVLGHGDCSTTSMPREVESLKGLRTVRVACGVWHTAALVEVVVGSSNPGNSSSGKLFTWGDGDKGRLGHGDKEPRLVPACVASLVNVSFCQVACGHNITIALTTLGRVYTMGSTSYGQLGTPEADGKLPTCIEGRISNSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDNDDRNTPTLVKALKDKQVKSVVCGSNFTAVICIHKWVYSADNSVCSGCRNPFGFRRKRHNCYNCGLVFCKACSSRKSLKASLAPNINKPYRVCDDCFTKLKKAMECGSTSRFSKNQSESIHHISNEVAEKETQDPRLHGQLSRLSSVESLKQPESRHSKPNRSRIPPIPNGSSQWGSFYSSKLPTSLVGSSTKIFSASVPGSRTVSRATSPVSSKPSPPCPVTLTPTLTVLTSPEVIVDDSKHTSDNLSQEIIKLRVQVEDLTCKSKLLEAELERTSRQLKGSTAIAGEETAKCKAAKEVIKSLTSQLKDMAERVPEGSITSSKSRSIAGHSSNLSLSPTDSNLSSLVSLEPESNGHSANPLSCKTKLRTELSEWVVQDEPGVYLTLFSLPGGGKDLRRVRFSRKRFIEKQAEKWWAENRAKVYERHNIRSAAKSVIGAPSVPLITNEKDCN* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01034 1063 Gene3D - 486 658 IPR009091 -
Eupl04g01034 1063 MobiDBLite consensus disorder prediction 144 159 - -
Eupl04g01034 1063 MobiDBLite consensus disorder prediction 926 952 - -
Eupl04g01034 1063 Gene3D - 198 380 IPR009091 -
Eupl04g01034 1063 Gene3D - 381 485 IPR009091 -
Eupl04g01034 1063 CDD PH_PLC_plant-like 12 122 - -
Eupl04g01034 1063 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 412 422 IPR000408 -
Eupl04g01034 1063 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 305 315 IPR000408 -
Eupl04g01034 1063 SUPERFAMILY RCC1/BLIP-II 256 647 IPR009091 -
Eupl04g01034 1063 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 921 - -
Eupl04g01034 1063 PRINTS Chromosome condensation regulator RCC1 signature 321 337 IPR000408 -
Eupl04g01034 1063 PRINTS Chromosome condensation regulator RCC1 signature 428 442 IPR000408 -
Eupl04g01034 1063 PRINTS Chromosome condensation regulator RCC1 signature 371 387 IPR000408 -
Eupl04g01034 1063 PRINTS Chromosome condensation regulator RCC1 signature 589 610 IPR000408 -
Eupl04g01034 1063 PRINTS Chromosome condensation regulator RCC1 signature 412 428 IPR000408 -
Eupl04g01034 1063 PRINTS Chromosome condensation regulator RCC1 signature 531 549 IPR000408 -
Eupl04g01034 1063 PRINTS Chromosome condensation regulator RCC1 signature 302 315 IPR000408 -
Eupl04g01034 1063 Gene3D - 12 128 IPR011993 -
Eupl04g01034 1063 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 650 712 IPR017455 -
Eupl04g01034 1063 MobiDBLite consensus disorder prediction 132 159 - -
Eupl04g01034 1063 Pfam FYVE zinc finger 646 712 IPR000306 GO:0046872
Eupl04g01034 1063 Coils Coil 905 925 - -
Eupl04g01034 1063 SUPERFAMILY PH domain-like 13 121 - -
Eupl04g01034 1063 Coils Coil 856 890 - -
Eupl04g01034 1063 Pfam Transcription factor regulating root and shoot growth via Pin3 984 1038 IPR013591 -
Eupl04g01034 1063 Pfam Transcription factor BRX N-terminal domain 900 928 IPR027988 -
Eupl04g01034 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 594 645 IPR000408 -
Eupl04g01034 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 371 425 IPR000408 -
Eupl04g01034 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 257 318 IPR000408 -
Eupl04g01034 1063 MobiDBLite consensus disorder prediction 754 781 - -
Eupl04g01034 1063 FunFam PH, RCC1 and FYVE domains-containing protein 1 228 479 - -
Eupl04g01034 1063 MobiDBLite consensus disorder prediction 929 952 - -
Eupl04g01034 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 370 422 IPR000408 -
Eupl04g01034 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 319 367 IPR000408 -
Eupl04g01034 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 489 538 IPR000408 -
Eupl04g01034 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 542 590 IPR000408 -
Eupl04g01034 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 595 642 IPR000408 -
Eupl04g01034 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 426 474 IPR000408 -
Eupl04g01034 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 370 IPR000408 -
Eupl04g01034 1063 SMART fyve_4 644 713 IPR000306 GO:0046872
Eupl04g01034 1063 SUPERFAMILY FYVE/PHD zinc finger 646 719 IPR011011 -
Eupl04g01034 1063 CDD FYVE_like_SF 656 708 - -
Eupl04g01034 1063 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 713 IPR013083 -
Eupl04g01034 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 490 541 IPR000408 -
Eupl04g01034 1063 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 464 474 IPR000408 -
Eupl04g01034 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 426 477 IPR000408 -
Eupl04g01034 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 542 593 IPR000408 -
Eupl04g01034 1063 ProSiteProfiles BRX domain profile. 984 1039 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01034 Eupl-Chr4 15814058 15869428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01034 909 1061 Major Intrinsic Protein MIP AT1G31880 30.159 2.45e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01034 - - psom:113318546 1546.95