Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01017 ATGTCTAGCAGAAGATCCCGCTCCAGGCAGTCAGGGGGTTCGAGGATTACCGATGATCAGATCAACGATCTTGTATCCAAGTTACAACAACTTCTCCCAGAGCTTCGCAATAGGAGCTCAGACAAGGTATCGGCCACGAAGGTCCTACAAGAGACATGCAACTACATTAGGAGCCTACACAGAGAGGTAGATGACCTGAGCGAGCGACTATCGGAGCTATTGGCTACGACGGACACCAGCAGTGCCCAAGCTGCGATAATTAGGAGTTTACTTATGTAA 279 0.4946 MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPELRNRSSDKVSATKVLQETCNYIRSLHREVDDLSERLSELLATTDTSSAQAAIIRSLLM* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01017 92 Gene3D - 15 88 IPR036638 GO:0046983
Eupl04g01017 92 Pfam Helix-loop-helix DNA-binding domain 19 60 IPR011598 GO:0046983
Eupl04g01017 92 CDD bHLH_AtPRE_like 16 76 - -
Eupl04g01017 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Eupl04g01017 92 FunFam Transcription factor ILI6 7 88 - -
Eupl04g01017 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 80 IPR036638 GO:0046983
Eupl04g01017 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Eupl04g01017 92 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01017 Eupl-Chr4 15582668 15583492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01017 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 73.118 1.50e-39 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl04g01017 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01017 - - ming:122068426 156.762