Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00986 ATGGCGGATTCATCACATGGGCCCGCAAGTTTCTTGACGCAGGCGAACGCTTTGCTTAGGAAGAACCTTACTTTCCAGAAACGTAATCTCAGGACAAATGTTAGGCTTGTCACATTCCCATTTTTCCTCTGTGTGCTGCTTGTTGTCATCCAAAATTTGGTTAACAAACAATTGGATAAGGATGAGAACAAGTGTGGCTGTATCTGTATTGACAGAAATGGAGATGGTACATGTGAGAAAGTGTGTGGGATACAGTACTCTACTTTGGATCAAGTGGGCACTTGTCCCATTCCTAGCCCTCCGCAATGGCCAGCTTTGTTGCAAACACCCAGTCCTGAATATCGTGCCATAAGAACTGATTTCATTCCATTTACGGACTTGCCAGACGAGTCGTGCAAGAGGACAGGTTCCTGCCCAGCAACTATACTTCTAACTGGGGGTAATCGATCTCTGGGAGAAAGGGACAGACACAAAAACCCAGTTGTCCAATTTTCTAGAACCAGCTTTCCTCTCAAATCGTCCCATGTATGTAGTTCAACCTCAGTGCACATCAAACTCTACATTTTCGATTCCCATCCAGATAGCATCCGTGACAATGCAACAAGCTTACGATTTCTTAAACTCAATGAGAATAACTTCAATGTGAGCATTTGGTACAACTCGACCTATAAGAATGACTCTGGGAGCGGTCCTCTCGGATTGGTGCGGGCTCCACGCTCAGTGAATGTGGTCTCCAATGCTTACCTCCAGTTCTTGAGAGGTACTGGTGTAAAGATGCTATTTGATTTTGTCAAAGAAATGCCCAAACCTGAAACACGACTCAGGCTGGATTTCTCTTCTCTTCTTGGTGCACTCTTCTTTACATGGGTCATTTTGCAACTTTTCCCTGTTATATTGACATCTCTGGTTTACGAGAAGCAACAAAATCTAAGAATCATGATGAAAATGCATGGGCTTGGCGATGTTCCTTATTGGACGATTTCCTATGCTTATTTTCTTTTCTTATCTTCAATCTACATCCTATGTTTTGTGGTATTCGGCTCTCTCATTGGTTTGAAGTTCTTCACGTTGAACGATTACAGCATACAGTTTGTGTTCTATTTCATCTATATAAACCTACAGATTTCGCTTGCTTTTCTAGTGGCAACAATTTTTTCAAATGTTAAAACCGCTACAGTATTGGGATACATATGCGTATTCGGATCAGGGCTCTTAGGAGGCTATCTTTTCCAGTCCTTTGTTGAAGACACATCATTCCCGAGAGGCTGGGTTGTAGTTATGGAGATTTTCCCTGGCTTTTCTCTATATCGTGGGCTATATGAGTTGGCACAATATTCGTTCAATGGATATTATATGGGGATTGATGGGATGCGGTGGAAAGATTTGAATGATGGCACGAATGGGATGAGAGAAGTCTTAATTATCATGTTTGTAGAATGGTTGATAGTGCTTCCTGTTGCATTTTATTTTGATCAAGTTGTGTCTTTAGGAAGTGGTGTCAGGAAGCACCCTTTGTTTTTCTTGCAAAACTTCCGAAAGAAGTCTTTGCCATCTTTTCGGAGGCCAAGTCTGCAGAGACAGGGATCAAAAGTTTTTGTTCAAATGGAGAAACCTGATGTTTCCCAAGAGAGGGAGAAGGTTGAACAGTTACTGCTTGAACCCAGTATGAGTCATGCCCTTATCTGTGATAACCTCAAAAAGGTGTATCCAGGGATGGATGGAAACCCTGAGAAATTCGCAGTTAGAGGGTTGTCTCTTGCTTTGCCTCGAGGGGAATGCTTTGGTATGCTCGGTCCTAATGGTGCTGGAAAAACCTCTTTTATCAATATGATGATTGGGCTCATAATGCCAACCTCCGGCACAGCATTCGTTCAGGGCTTGGACATACGGACTGACATGGACAGAATATATACCAGCATGGGTGTATGCCCACAGCATGACCTGCTCTGGGAAACACTAACAGGTAGTGAGCACCTACTATTTTATGGCAGACTGAAGAACCTGAAAGGTGCTGCTTTAACACTAGCAGTGGAAGAATCTCTGAAGAGTGTAAACCTATTTCATGGAGGTGTTGGCAATAAAAAAGCTGGGAAATACAGTGGTGGTATGAAGAGGAGGCTTAGTGTTGCCATCTCTCTGATTGGAGATCCTAAAGTTGTTTATATGGATGAGCCTAGTACTGGATTAGACCCAGCTTCAAGAAACAATTTGTGGAATGTCGTGAAACGTGCAAAGCAAGACCGGGCAATTATTCTCACCATTAAAGGCAAGATATGGAGGATCGTATGTGTTACAATGACAACATCTTCAAGTCAAGAGGAGGAGGTGGAGAACTTGGTACGCCGTCTCTCTCCAAGTGCAAACAAGATCTACCACATATCTGGAACCCAGAAGTTTGAACTGCCGAAGCAAGAGGTCAGAATTGCAGATGTTTTCCAAGCAGTTGAGAATGCAAAGAGAAAGTTCACGATACATGCGTGGGGTCTGGCTGATACCACCTTGGAGGATGTCTTCATCAAGGTTGCTCGAGGGGCCCAGGCGTTCAACGTGCTCTCTTGA 2559 0.4345 MADSSHGPASFLTQANALLRKNLTFQKRNLRTNVRLVTFPFFLCVLLVVIQNLVNKQLDKDENKCGCICIDRNGDGTCEKVCGIQYSTLDQVGTCPIPSPPQWPALLQTPSPEYRAIRTDFIPFTDLPDESCKRTGSCPATILLTGGNRSLGERDRHKNPVVQFSRTSFPLKSSHVCSSTSVHIKLYIFDSHPDSIRDNATSLRFLKLNENNFNVSIWYNSTYKNDSGSGPLGLVRAPRSVNVVSNAYLQFLRGTGVKMLFDFVKEMPKPETRLRLDFSSLLGALFFTWVILQLFPVILTSLVYEKQQNLRIMMKMHGLGDVPYWTISYAYFLFLSSIYILCFVVFGSLIGLKFFTLNDYSIQFVFYFIYINLQISLAFLVATIFSNVKTATVLGYICVFGSGLLGGYLFQSFVEDTSFPRGWVVVMEIFPGFSLYRGLYELAQYSFNGYYMGIDGMRWKDLNDGTNGMREVLIIMFVEWLIVLPVAFYFDQVVSLGSGVRKHPLFFLQNFRKKSLPSFRRPSLQRQGSKVFVQMEKPDVSQEREKVEQLLLEPSMSHALICDNLKKVYPGMDGNPEKFAVRGLSLALPRGECFGMLGPNGAGKTSFINMMIGLIMPTSGTAFVQGLDIRTDMDRIYTSMGVCPQHDLLWETLTGSEHLLFYGRLKNLKGAALTLAVEESLKSVNLFHGGVGNKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTIKGKIWRIVCVTMTTSSSQEEEVENLVRRLSPSANKIYHISGTQKFELPKQEVRIADVFQAVENAKRKFTIHAWGLADTTLEDVFIKVARGAQAFNVLS* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00986 852 ProSitePatterns ABC transporters family signature. 699 713 IPR017871 GO:0005524|GO:0016887
Eupl04g00986 852 Pfam ABC-2 family transporter protein 210 484 IPR013525 GO:0016020|GO:0140359
Eupl04g00986 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 753 IPR027417 -
Eupl04g00986 852 Pfam ABC transporter 582 726 IPR003439 GO:0005524
Eupl04g00986 852 SMART AAA_5 590 796 IPR003593 GO:0016887
Eupl04g00986 852 CDD ABC_subfamily_A 560 753 - -
Eupl04g00986 852 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 762 846 IPR026082 GO:0016020|GO:0055085|GO:0140359
Eupl04g00986 852 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 560 806 IPR003439 GO:0005524
Eupl04g00986 852 Gene3D - 552 766 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00986 Eupl-Chr4 15106217 15126221 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00986 569 752 Calmodulin-binding Proteins AT2G36910 27.895 8.18e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00986 - - vvi:100253652 1288.09