Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00979 ATGGGTTATCTGAATCGAGTTTCAAAAACCCTGAAACCATCCAGGTACTTGTCTCTGCTACATGATTCCTCTACATTTACCCAATCTTATACTATATTGGGTAGAAACCCAACCTTGAGTAGATTGAATTGGCGATATTTCGCTTGGGGACAGGCGTTCTGTTCTCATTCTCGCCAAAGTAGCAGAGAAAGCGTTGATTTGAGTCAGTACCCTCCAGAAAGGATTCGAAACTTTTCTATTATCGCCCATGTTGATCATGGCAAATCGACCCTCGCTGACCGGCTTTTGGAGCTCACGGGGACGATAAAGCGGGGCCACGGTCAGCCGCAGTACCTTGATAAGTTGCAGGTAGAGAGAGAAAGAGGAATAACAGTTAAAGCTCAGACAGCTACTATGTTCCACAAGCACAACTTCCATTGTCCTGATGTTACTGATACACAAGACTCACCGAGTTTTTTACTAAATCTAATCGATACACCTGGTCATGTGGATTTCAGCTATGAAGTATCAAGATCTCTTGCAGCTTGCCAGGGTGCCCTGTTGGTTGTTGATGCTGCCCAAGGTGTTCAAGCACAGACAGTTGCTAACTTCTATCTTGCTTTTGAATCTAACCTCACAATAATCCCCATCATAAATAAAATTGACCAGCCAACTGCTGATCCCGATCGCGTTAAGGCTCAGCTGAAATCTATGTTTGATCTTGATCCTAAAGATGCTCTGTTAACTTCTGCCAAAACTGGCGAAGGCCTTGAGCATGTCCTTCCTGCTGTCATAGAGCGAATACCTCCTCCTCCCGGGAAGAGCAGTTCACCTTTACGGATGCTTTTGTTGGATTCTTATTATGATGAATACAAAGGAGTAATCTGCCATGTCGCAGTTGTTGATGGTGCACTGCGCAAGGGGGATAAGATTTCATCTGCGGCAACCGGCCAAACTTATGAAGTTTTGGATGTTGGAGTCATGCATCCTGAACTCACACCTACTGGAGTGCTTTTGACTGGACAAGTTGGATATGTTGTCACTGGCATGCGTTCAACCAAAGAGGCACGTGTTGGAGACACCCTTTATCAAACCCGAAGCATTGTAGAGCCTCTTCCAGGTTTCAAGCCTGCGAAGCATATGGTGTTTTCTGGTCTCTATCCGGCTGATGGATCTGATTTCGAAGCTCTCAACCATGCAATAGAGAGACTCACATGCAATGATGCCAGCGTCTCTGTTACTAAAGAGAGTAGCACTGCACTTGGCCTCGGTTTCAGGTGTGGTTTCTTAGGTTTACTTCACATGGATGTTTTTCATCAGCGGCTTGAACAAGAGCATGGAGCACGAATCATTTCTACTACTCCAACTGTACCGTATATTTTTGAATATTCCGATGGAAGCAAAGTAGAAGTTCAGAATCCTGCTGCACTGGCCACAAATCCTGGAAAACGTGTAACAGCATGTTGGGAACCAACCGTAAATGCTACCATTATCATTCCTAGTGAATATGTTGGGGCTATTATTACCCTTTGCTCTGAGCGTAGAGGGGAGCAACTGGAGTATTCATTTATTGATAGTCAACGGGCATTTATGAAATATCGACTTCCATTGAGGGAAATTGTTGTGGATTTCTACGATGAATTGAAGAGTATAACATCTGGGTATGCGTCATTTGATTATGAGGATGCAGATTATCAAGCCTCTGATTTGGTGAAGCTTGATATCCTCCTAAATGGACAACCAGTGGATGCTATGGCAACCATTGTTCACAATCTGAAGGCACAACGGGTTGGTCGTGAACTGGTGGATAAGCTGAAGAAGTTTATTGACAGGCAAATGTTTGAGATAACAATACAAGCTGCTATTGGATCGAAGGTTATTGCTAGAGAGACGATTTCAGCAATGAGGAAGAATGTTCTTGCAAAATGCTATGGTGGGGATGCCACGAGAAAGAAGAAGCTGCTGGAGAAGCAAAAGGAAGGGAAGAAGCGCATGAAACGTGTGGGCTCTGTTGATATACCTCAGGAGGCTTTTCATGAGCTGTTGAAGGTTTCCTGA 2037 0.4428 MGYLNRVSKTLKPSRYLSLLHDSSTFTQSYTILGRNPTLSRLNWRYFAWGQAFCSHSRQSSRESVDLSQYPPERIRNFSIIAHVDHGKSTLADRLLELTGTIKRGHGQPQYLDKLQVERERGITVKAQTATMFHKHNFHCPDVTDTQDSPSFLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTVANFYLAFESNLTIIPIINKIDQPTADPDRVKAQLKSMFDLDPKDALLTSAKTGEGLEHVLPAVIERIPPPPGKSSSPLRMLLLDSYYDEYKGVICHVAVVDGALRKGDKISSAATGQTYEVLDVGVMHPELTPTGVLLTGQVGYVVTGMRSTKEARVGDTLYQTRSIVEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSVTKESSTALGLGFRCGFLGLLHMDVFHQRLEQEHGARIISTTPTVPYIFEYSDGSKVEVQNPAALATNPGKRVTACWEPTVNATIIIPSEYVGAIITLCSERRGEQLEYSFIDSQRAFMKYRLPLREIVVDFYDELKSITSGYASFDYEDADYQASDLVKLDILLNGQPVDAMATIVHNLKAQRVGRELVDKLKKFIDRQMFEITIQAAIGSKVIARETISAMRKNVLAKCYGGDATRKKKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00979 678 Pfam Elongation factor Tu GTP binding domain 74 262 IPR000795 GO:0003924|GO:0005525
Eupl04g00979 678 CDD EF4_III 373 448 - -
Eupl04g00979 678 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 73 265 IPR000795 GO:0003924|GO:0005525
Eupl04g00979 678 FunFam Translation factor GUF1, mitochondrial 562 636 - -
Eupl04g00979 678 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 113 128 IPR031157 -
Eupl04g00979 678 SUPERFAMILY EF-G C-terminal domain-like 374 451 IPR035647 -
Eupl04g00979 678 FunFam Elongation factor 4 72 266 - -
Eupl04g00979 678 NCBIfam translation elongation factor 4 74 677 IPR006297 GO:0005525
Eupl04g00979 678 NCBIfam small GTP-binding protein domain 76 252 IPR005225 GO:0005525
Eupl04g00979 678 CDD LepA 76 261 - -
Eupl04g00979 678 Pfam Elongation factor Tu domain 2 286 356 IPR004161 GO:0005525
Eupl04g00979 678 SUPERFAMILY EF-G C-terminal domain-like 482 576 IPR035647 -
Eupl04g00979 678 Pfam Elongation factor G C-terminus 483 568 IPR000640 -
Eupl04g00979 678 CDD lepA_C 483 562 IPR035654 -
Eupl04g00979 678 Gene3D - 448 560 - -
Eupl04g00979 678 FunFam Translation factor GUF1, mitochondrial 267 365 - -
Eupl04g00979 678 FunFam Translation factor GUF1, mitochondrial 448 560 - -
Eupl04g00979 678 Gene3D Translation factors 267 365 - -
Eupl04g00979 678 Pfam GTP-binding protein LepA C-terminus 570 676 IPR013842 -
Eupl04g00979 678 PRINTS GTP-binding elongation factor signature 77 90 IPR000795 GO:0003924|GO:0005525
Eupl04g00979 678 PRINTS GTP-binding elongation factor signature 155 165 IPR000795 GO:0003924|GO:0005525
Eupl04g00979 678 PRINTS GTP-binding elongation factor signature 120 128 IPR000795 GO:0003924|GO:0005525
Eupl04g00979 678 PRINTS GTP-binding elongation factor signature 207 216 IPR000795 GO:0003924|GO:0005525
Eupl04g00979 678 PRINTS GTP-binding elongation factor signature 171 182 IPR000795 GO:0003924|GO:0005525
Eupl04g00979 678 Gene3D - 73 266 IPR027417 -
Eupl04g00979 678 CDD EF4_II 272 356 - -
Eupl04g00979 678 FunFam Translation factor GUF1, mitochondrial 366 447 - -
Eupl04g00979 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 302 IPR027417 -
Eupl04g00979 678 PANTHER TRANSLATION FACTOR GUF1-RELATED 54 677 IPR006297 GO:0005525
Eupl04g00979 678 Hamap Elongation factor 4 [lepA]. 71 678 IPR006297 GO:0005525
Eupl04g00979 678 Gene3D Elongation Factor G (Translational Gtpase), domain 3 366 447 - -
Eupl04g00979 678 Gene3D - 562 636 IPR038363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00979 Eupl-Chr4 15016436 15027373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00979 75 216 Eukaryotic Initiation Factors Gene Family AT1G56070 40.972 1.24e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00979 K21594 - nnu:104586753 1202.96