Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00971 ATGCAACTCCTATCTTATCGTGTCCCTCTCCAAACCCCCAAATGTCCCTCAATCCTCCCCCAAGAATCTCTCAGAAGCACCAACTGCTTCACTCATAAGAGGAAGCTCTTCGTAAAATGCCGACGTTCAGAGTACTTCGACCAACAGAGGTTCACCAAACCTTCGGACGACTCGTTCTCTCCACAGTCTCAAGGAGCTTCGCCTCCGAAGGTTTTTGTTGGTCATTCGATATACAAAGGGAAAGCAGCTCTAACCATAGAGCCCAAAGCACCGGAGTTCGTTCCTTTAGATTCGGGTGCGATTAAGCTAACAAAGGAGGGTTTTGTGCTCCTTCAATTTGCTCCTGCAGCCGGCATTCGGCAATATGATTGGAACAGAAAGCAGGTATTCTCATTATCAGTGACTGAAATTGGAACTTTGATGAGCCTTGGCGCGAGGGATTCATGTGAATTTTTTCATGACCCATTTAAAGGCAGAAGCGAAGAAGGCAAGGTCAGGAAGGTTTTGAAGGCAGAGCCCCTTCCAGATGGCTCCGGTCACTTCTTTAATCTCAGTGTTCAAAACAAGCTCATGAATGTGGACGAGAACATTTATATCCCTGTTACCAAGGCAGAGTTCGCGGTTCTCATCTCGGCGTTCAATTTTATCCTGCCGTACCTTCTGGGTTGGCACACTTTTGTAAATTCCATTAAGCCAGACGAAACTAGCCGTTTCAACAACGCCAATCCACGGTCCGGGGCTGACTTGGAATGGAACAGGTAG 762 0.4738 MQLLSYRVPLQTPKCPSILPQESLRSTNCFTHKRKLFVKCRRSEYFDQQRFTKPSDDSFSPQSQGASPPKVFVGHSIYKGKAALTIEPKAPEFVPLDSGAIKLTKEGFVLLQFAPAAGIRQYDWNRKQVFSLSVTEIGTLMSLGARDSCEFFHDPFKGRSEEGKVRKVLKAEPLPDGSGHFFNLSVQNKLMNVDENIYIPVTKAEFAVLISAFNFILPYLLGWHTFVNSIKPDETSRFNNANPRSGADLEWNR* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00971 253 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 62 237 - -
Eupl04g00971 253 Pfam Whirly transcription factor 77 211 IPR013742 GO:0003697|GO:0006355|GO:0006952
Eupl04g00971 253 Gene3D Transcriptional Coactivator Pc4; Chain A 62 235 IPR009044 GO:0003677|GO:0006355
Eupl04g00971 253 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 32 253 IPR013742 GO:0003697|GO:0006355|GO:0006952
Eupl04g00971 253 SUPERFAMILY ssDNA-binding transcriptional regulator domain 69 253 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00971 Eupl-Chr4 14911009 14920440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00971 2 253 Whirly Transcription Factor Family AT1G14410 66.541 3.97e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Eupl04g00971 Whirly 1.6e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00971 K26559 - nnu:104596899 401.749