Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00967 ATGGAGATGACCACAGTGAAGTGCGAAACAAACCCAGTAAGGCGACGTTTGTGCACGGCAGATGGTGAAACCCGAGATGTTAAGTGCATTAAGAGAAGGCGAAAAGAGCCTGTCACAGATGCCATTAATGGCTGTGATGATCATCAAACAGAGCAACAACAAAAACAAAAACAAGTTGATCAGTCTACTACTAGCACTACTAGTACTGTGAAGAGAAGTTCGAGATTTCGTGGGGTTAGCAGACATAGATGGACAGGTCGATACGAAGCGCACCTATGGGACAAAGGATCATGGAATGCGACGCAGAAGAAGAAGGGAAAGCAAGGTGCTTATGATGAAGAAGAATCTGCTGCGAGAGCGTATGATTTAGCTGCACTCAAGTACTGGGGCTCGACGACTTTCACAAATTTTCCGGTCTGTGATTACGAGAAAGAAATCGAAATAATGCGGAATGTAACAAAAGAAGAGTACTTAGCCACATTGAGAAGGAAGAGCAGTGGTTTCTCAAGAGGTGTATCCAAGTACAGGGGTGTTGCAAGGCATCATCACAATGGGAGATGGGAAGCAAGGATAGGGAGGGTGTTTGGAAACAAGTACTTGTACCTTGGCACTTACAGTACCCAAGAGGAAGCTGCCCACGCTTACGACATTGCGGCAATTGAGTATAGAGGGATCAATGCAGTGACTAACTTCGACTTGAGTACGTACATCAGGTGGCTAAGACCAGGGACCAACACACTAGTTACTTCCCAGGAACCAAGAACAAATGCAGAAGTGGTACCAGAGTTGCCATTCTTCCAGACCAACACTTTCACCATAGATGATTTAGGCTCTCCTCAAAAGCAAGAAGTTTTTCCAAAAAAGGTCTCTGTGAACTCTTGCAACAAGTCCTCTTCACCTACTGCACTTAGTCTCCTCCTTCGATCATCCATATTTAGAGAACTGGTGGAGAAGAACTCCAATGCAACCGATGACGAAATCGACGGGGATGAAACAAGACAGCAACCACAAATAGGAAGCGACTACGAGTATGGCGGGATCTTCTACGATGGAATTGCAGATATTCCATATGTGTGCGCTAACGGCGATACGATGCCTAGTGTTGAGCTGCAGGAGGAGAGTGAGTGTCCCTCCTTATTCTATAATCGAACGGTGCAACCCGTTTGGAATGGTGTCATAAGCATGTCTTCAATCCATTAA 1200 0.455 MEMTTVKCETNPVRRRLCTADGETRDVKCIKRRRKEPVTDAINGCDDHQTEQQQKQKQVDQSTTSTTSTVKRSSRFRGVSRHRWTGRYEAHLWDKGSWNATQKKKGKQGAYDEEESAARAYDLAALKYWGSTTFTNFPVCDYEKEIEIMRNVTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAAHAYDIAAIEYRGINAVTNFDLSTYIRWLRPGTNTLVTSQEPRTNAEVVPELPFFQTNTFTIDDLGSPQKQEVFPKKVSVNSCNKSSSPTALSLLLRSSIFRELVEKNSNATDDEIDGDETRQQPQIGSDYEYGGIFYDGIADIPYVCANGDTMPSVELQEESECPSLFYNRTVQPVWNGVISMSSIH* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00967 399 SMART rav1_2 75 144 IPR001471 GO:0003700|GO:0006355
Eupl04g00967 399 SMART rav1_2 174 238 IPR001471 GO:0003700|GO:0006355
Eupl04g00967 399 SUPERFAMILY DNA-binding domain 173 234 IPR016177 GO:0003677
Eupl04g00967 399 Gene3D AP2/ERF domain 173 234 IPR036955 GO:0003700|GO:0006355
Eupl04g00967 399 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Eupl04g00967 399 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Eupl04g00967 399 PRINTS Ethylene responsive element binding protein signature 214 234 IPR001471 GO:0003700|GO:0006355
Eupl04g00967 399 CDD AP2 75 139 IPR001471 GO:0003700|GO:0006355
Eupl04g00967 399 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 52 255 - -
Eupl04g00967 399 FunFam AP2-like ethylene-responsive transcription factor 173 234 - -
Eupl04g00967 399 CDD AP2 173 234 IPR001471 GO:0003700|GO:0006355
Eupl04g00967 399 ProSiteProfiles AP2/ERF domain profile. 75 138 IPR001471 GO:0003700|GO:0006355
Eupl04g00967 399 ProSiteProfiles AP2/ERF domain profile. 174 232 IPR001471 GO:0003700|GO:0006355
Eupl04g00967 399 Pfam AP2 domain 173 224 IPR001471 GO:0003700|GO:0006355
Eupl04g00967 399 Pfam AP2 domain 74 130 IPR001471 GO:0003700|GO:0006355
Eupl04g00967 399 SUPERFAMILY DNA-binding domain 74 139 IPR016177 GO:0003677
Eupl04g00967 399 MobiDBLite consensus disorder prediction 45 74 - -
Eupl04g00967 399 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00967 Eupl-Chr4 14870899 14873925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00967 51 236 AP2-EREBP Transcription Factor Family AT5G57390 62.176 8.75e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Eupl04g00967 AP2 4.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00967 - - psom:113331124 523.087