Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00966 ATGAAAGTCCCTAGGACTTATCAGCTTGGGGTTCGGATTAAAGATGGTTTGTTTTACAAGTTCACAGGTTTTCGTGACCAGGATGTCAATAGCTTGACAACTTTTATTCAAAACAATGTTGGAATAACACCAGAAGAAAAACAGCTTTCTGTCAGTGGCCGGAATTGGGGAGACGTTGAATTAAATGGGAACACACTGAATTTTCTGGTTGGTTCGAAGCAGGCGTTTGAAGTATCTTTAGCAGATGTCTCACAGACACATCTTCAAGGGAAAAATGATGTTGTCTTGGAGTTCCATGTGGATGATACTACTGGGGCTAATGAGAAAGATTCATTGGTGGAGATTAGTTTTCATTTACCTAATTCCAACACCCAATATGTTGGTGATGAAACTCGTCCTTCAGCCCAGGTTTTCCGTGACAAAATCATGTCAATGGCGGATGTTGGTCCATCAGGCGAAGATGCTGTTGTTACATTTGAGGGGATTGCTATTCTCACACCCAGGGGACGATACAGTGTTGAACTCCATCTTTCATTCTTCCGGCTCCAAGGACAGGCTAATGATTTTAAAATTCAATACAGCAGTGTTGTTCGCCTTTTTCTACTGCCTAAGTCTAATCAATCACATACCTTCGTCGTTGTTACTCTTGACCCACCCATCCGTAAAGGGCAAACGTTGTACCCACATATTGTGTTGCAGTTTGAAACTGATTACGTGGTTGAAAGTGCGCTGTCAATGAACGAAGATCTCTTGAATACCAAGTATAAGGACAGGTTGGAAGCATCATATAAGGGCCTCATTCATGAAGTCTTCACCATTATATTGCGTGGCTTATCTGGTGCCAAAGTTACTAGACCAGGAAAGTTCCGAAGTTGTCAAGATGGATATGGAGTGAAGTCGTCATTGAAAGCCGAAGATGGAGTACTGTATCCACTAGAAAAGGGCTTCTTCTTTCTACCAAAACCACCTACTCTCATCCTCCATGATGAGATTGAATATGTTGAGTTTGAGAGACATGGCGCTGGGAGCACAAATATGCACTATTTCGATCTTCTCGTCAAACTAAAGAGTGAGCAAGAACATCTCTTTCGGAACATTCAGAGGAATGAATACCATACTCTTTTTGACTTCATTAGTGGAAAGGGCTTGAAAATTATGAACCTTGGAGGTGTCCAAACCAAGGATGGCGTTGCTGCTGTTCTTCAGAACGATGACGACGATGCTGTTGATCAATATCTTGAGCGGGTTAGAAATGAGGCTGGTGGTGACGAGAGCGATGAGGAGGATGAGGATTTCGTTGCAGAAAATGATGATGGAGGCTCACCTACTGATGATTCTGGAGGAGAGGAATCTGATGCAAGTGATAGTGGAGATGACAAAGAGAAACCCGCAAAAAAGGAAGCCAAGAAAGAAGCTTCTGCTACCAAGTCATCTTCAGCTAAGAGGAAATCCAAAGATGGAGATGAAGATGGTTCAAAGAAGAGAAAACAGAAGAAGAAAAAGGATCCAAATGCACCAAAGAAGGCAATGCCTGGTTTCATGTTTTTCTCGCAAACTGAAAGAGAAAATGTAAGGAAGAGGAATCCCGGAATGGCATTTACAGATGTGGGGAGGACTCTTGGAGAGATGTGGAGGAAGATGACTGCTGAGGAGAAAGAGCCATACGAAGCAAAAGCCCGAGCTGATCAGAAGCGTTACAAGGAGGCCATGGCCGGTTACAAGAGTGCTCCCACAAGTATTGATTCGGGGAACGAATCTGACAGCGAATAA 1770 0.4316 MKVPRTYQLGVRIKDGLFYKFTGFRDQDVNSLTTFIQNNVGITPEEKQLSVSGRNWGDVELNGNTLNFLVGSKQAFEVSLADVSQTHLQGKNDVVLEFHVDDTTGANEKDSLVEISFHLPNSNTQYVGDETRPSAQVFRDKIMSMADVGPSGEDAVVTFEGIAILTPRGRYSVELHLSFFRLQGQANDFKIQYSSVVRLFLLPKSNQSHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVESALSMNEDLLNTKYKDRLEASYKGLIHEVFTIILRGLSGAKVTRPGKFRSCQDGYGVKSSLKAEDGVLYPLEKGFFFLPKPPTLILHDEIEYVEFERHGAGSTNMHYFDLLVKLKSEQEHLFRNIQRNEYHTLFDFISGKGLKIMNLGGVQTKDGVAAVLQNDDDDAVDQYLERVRNEAGGDESDEEDEDFVAENDDGGSPTDDSGGEESDASDSGDDKEKPAKKEAKKEASATKSSSAKRKSKDGDEDGSKKRKQKKKKDPNAPKKAMPGFMFFSQTERENVRKRNPGMAFTDVGRTLGEMWRKMTAEEKEPYEAKARADQKRYKEAMAGYKSAPTSIDSGNESDSE* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00966 589 FunFam Fact complex subunit ssrp1 146 285 - -
Eupl04g00966 589 Pfam Histone chaperone Rttp106-like 296 386 IPR013719 -
Eupl04g00966 589 Gene3D High mobility group box domain 489 586 IPR036910 -
Eupl04g00966 589 CDD PH1_SSRP1-like 154 287 - -
Eupl04g00966 589 SUPERFAMILY HMG-box 497 579 IPR036910 -
Eupl04g00966 589 FunFam FACT complex subunit SSRP1 286 395 - -
Eupl04g00966 589 Gene3D - 146 285 - -
Eupl04g00966 589 Pfam HMG (high mobility group) box 506 574 IPR009071 -
Eupl04g00966 589 SMART hmgende2 505 575 IPR009071 -
Eupl04g00966 589 Gene3D - 286 394 IPR011993 -
Eupl04g00966 589 FunFam FACT complex subunit SSRP1 490 582 - -
Eupl04g00966 589 MobiDBLite consensus disorder prediction 418 533 - -
Eupl04g00966 589 FunFam FACT complex subunit SSRP1 43 126 - -
Eupl04g00966 589 MobiDBLite consensus disorder prediction 568 589 - -
Eupl04g00966 589 SMART Rtt106_2 295 388 IPR013719 -
Eupl04g00966 589 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 506 574 IPR009071 -
Eupl04g00966 589 SUPERFAMILY PH domain-like 153 387 - -
Eupl04g00966 589 Gene3D - 43 126 IPR038167 -
Eupl04g00966 589 Pfam Structure-specific recognition protein (SSRP1) 53 121 IPR024954 -
Eupl04g00966 589 CDD PH2_SSRP1-like 289 388 - -
Eupl04g00966 589 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 559 - -
Eupl04g00966 589 MobiDBLite consensus disorder prediction 423 452 - -
Eupl04g00966 589 Pfam POB3-like N-terminal PH domain 1 45 IPR035417 -
Eupl04g00966 589 MobiDBLite consensus disorder prediction 453 496 - -
Eupl04g00966 589 PRINTS Structure-specific recognition protein signature 211 227 IPR000969 GO:0003677|GO:0005634
Eupl04g00966 589 PRINTS Structure-specific recognition protein signature 303 321 IPR000969 GO:0003677|GO:0005634
Eupl04g00966 589 PRINTS Structure-specific recognition protein signature 321 338 IPR000969 GO:0003677|GO:0005634
Eupl04g00966 589 PRINTS Structure-specific recognition protein signature 188 204 IPR000969 GO:0003677|GO:0005634
Eupl04g00966 589 PRINTS Structure-specific recognition protein signature 166 182 IPR000969 GO:0003677|GO:0005634
Eupl04g00966 589 PRINTS Structure-specific recognition protein signature 276 289 IPR000969 GO:0003677|GO:0005634
Eupl04g00966 589 PRINTS Structure-specific recognition protein signature 347 363 IPR000969 GO:0003677|GO:0005634
Eupl04g00966 589 PRINTS Structure-specific recognition protein signature 363 381 IPR000969 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00966 Eupl-Chr4 14847419 14861331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00966 502 574 ARID Transcription Factor Family AT1G04880 34.247 1.10e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Eupl04g00966 Rtt106 9.4e-21 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00966 K09272 - aew:130777375 939.873