Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00965 ATGGAAGCCATTAAGCCCAGTTTGTTACTTTTCTTCTTTTTCTTATCTTTTGCTTTAATAATCCCGATCTCGCTGGCCCATATTGGCCATTTCGATGAGGTGTGGCAGAAACGAGCTGATGAAGCCAGGAAGAATGCCCTGGAAGCCTATCACTCCAATCCCGAGGAAATCACTGAGCATCTCAACCTTCATGTCCACTTGGCTTTACAAGAGTCGACTAACAGCACAAGGAGGAGCCTGCGCACAAACAAGGGTCCATGCCGAGCAACGAACCCGATCGATCGGTGCTGGAGATGCCGAAGGAATTGGGCCAGCAACCGCAAGAGGCTGGCGGATTGCGTACTTGGATTCGGTCGGAAGACATATGGTGGGAAGTACGGTAAATACTATGTAGTGACTGACTCGTCGGACAATGATTTGGTGAATCCCAAGAAAGGAACCCTGCGGCACGCAGTCATCCAGCCGCGACCATTGTGGATCATATTTGCAAGTGACATGATGATCAGATTGAGCGAGGAACTCATCATGACCGGTGATAAGACCATCGACGCTCGTGGAGCCAACGTCCACATCGCTTACGGTGCAGGCATCACCATCCAATTCGTGAAGAATGTGATCATCCATGGACTACATATTCATGACATAAATGCAGGCAACGGTGGAACCATCAGGGATTCCGTTCACCACGTTGGATTTAGGACAGCGAGCGATGGAGATGGTATCTCGATCTTCGGCTCCACAAACATATGGATTGATCACTTGTCGATGTCCAACTGCAAAGATGGACTCATCGACGCCATCCAAGGATCTACGGCCATTACCATCTCCAACAACCACATGACCCGCCACAACGAGGTGATGTTGTTCGGTGCAAGCGACAGTTACTCGGGAGATGCCATCATGCAAGTGACCGTTGCATTCAACCATTTCGGGAGGGGACTAGTACAGAGGATGCCAAGGTGCCGATGGGGGTTCTTCCATGTCGTCAACAACGACTATACCCACTGGGAAATGTACGCTGTTGGTGGTAGCCGCAATCCTACCATCGTCAGCCAGGGTAACCGCTACATTGCTCCTCCTAACTTGGCTGCAAAGCAGGTAACGAAGAGGGACTACGCATCAGAGAGTGAGTGGAGTCGTTGGACATGGAGATCGGAGGGAGATCTGATGAAGAATGGTGCCTTCTTCATTCAATCCGGGAACCCAAGCAGGAAGAGGCCGTACACAAGGCATGAAATGATCAAGGCAAAGCCTGGGTCGTTCGTGACTAGGCTCACGCGCTTCTCTGGTTCCCTTAACTGCAGGATAGGCCGACCTTGTTAA 1323 0.5072 MEAIKPSLLLFFFFLSFALIIPISLAHIGHFDEVWQKRADEARKNALEAYHSNPEEITEHLNLHVHLALQESTNSTRRSLRTNKGPCRATNPIDRCWRCRRNWASNRKRLADCVLGFGRKTYGGKYGKYYVVTDSSDNDLVNPKKGTLRHAVIQPRPLWIIFASDMMIRLSEELIMTGDKTIDARGANVHIAYGAGITIQFVKNVIIHGLHIHDINAGNGGTIRDSVHHVGFRTASDGDGISIFGSTNIWIDHLSMSNCKDGLIDAIQGSTAITISNNHMTRHNEVMLFGASDSYSGDAIMQVTVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWEMYAVGGSRNPTIVSQGNRYIAPPNLAAKQVTKRDYASESEWSRWTWRSEGDLMKNGAFFIQSGNPSRKRPYTRHEMIKAKPGSFVTRLTRFSGSLNCRIGRPC* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00965 440 Pfam Pectate lyase, N terminus 27 80 IPR007524 GO:0030570
Eupl04g00965 440 Gene3D - 90 433 IPR012334 -
Eupl04g00965 440 Pfam Pectate lyase 186 355 IPR002022 -
Eupl04g00965 440 PANTHER PECTATE LYASE 18-RELATED 42 438 IPR045032 GO:0030570
Eupl04g00965 440 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Eupl04g00965 440 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Eupl04g00965 440 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Eupl04g00965 440 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Eupl04g00965 440 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Eupl04g00965 440 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Eupl04g00965 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Eupl04g00965 440 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Eupl04g00965 440 SMART amb_all 165 362 IPR002022 -
Eupl04g00965 440 SUPERFAMILY Pectin lyase-like 91 430 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00965 Eupl-Chr4 14843433 14845482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00965 1 440 Polysaccharide Lyase AT5G15110 58.228 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00965 K01728 - vvi:100262177 682.945