Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00950 ATGGCAATGGAATCGCAACTGGGTCTGATCGACCAGTCGTTTAGCACCCGTTACTCATCTTGGGTTCGAGAAGCTCTTGAGGACATACCCGATAATTTTACCATCACTGATCCTTGCATTTCTGGCCATCCGATCGTCTTTGCCAGCCGGGGGTTCCTTAAAATGTCTGGGTACTCGAAAGATGAGGTTATCGGGAAGAATGGGAGGATATTTCAGGGACCGGGGACCGACCGGAGGTCGGTAATGGAGATTCGAGAGGCAATTCGAGAAGAGCGGACAATTCAGATAAGCTTATTGAATTACCGGAAAGACGGGACGCCATTCTGGATGTTGTTTCATCTAAGTCCGGTTTTCAGTAAGGAAGATGGGAGGGTGATTCATTTCGTTGCGGTTCAGGTGCCGATATCGAGGAAGTGGAGGAGTTCTGGAACTGGGTTTGGGAGGAATTGGGGTAATTTGGGTGAGGATGGGTCTAGATCGCAGGAAATTGTGTTTGGGTCGTGTCGGAGGGAGGTGTGCACGGATTCTGTGGCAGAATTAGGTCGTGTTCGAGCTTTGGATTCGTTTGTGGATTCTGATAATAGAGGATTGGAGGCTGAAGAGTCATGCGAGGCAAGCGACCTGGAGAAACGAAAAGCTGAAATAGCCATTAACAGCATCTTATCTGTGCTGACTCACTATAGCGAGCCAACACGCCAATTGGTCTGCGGGAAGAGATGTGGCTTATCTGGGATGGGTCCTCTTGGTTCATCCTTAAATATATCTCTCGGTAGAATCAAACAGAGCTTTGTATTAACTGATCCCCACTTACACGACATGCCCATTGTTTACGCAAGCGATGCCTTCCTAAATTTGACAGGCTACACTAGAAACGAAGTGTTGGGCAGCAATTGTAGATTTTTAAGTGGACCTGACACGGATGCCAAGGCTCTATGCCAGATAAGGGAGAGCATTCAAAGTGAGCAAGCTTGTTCAGTACGTATCTTAAATTATAGGTGCATACTCTTCTACATAACTTTTGATATTTTAGACGAGGTGGACTCTATACTCATGTTTGAACAACCTATTTTGGCTATTATATTATACTTTAATTTCAGGAAGGATGGAAGCTTATTCTGGAATCTTCTTCACATATCACCTGTCCGGAATGCTTCTGGCAAGATAGCATATTATGTTGGTGTTCAGATAGAGGAGGGTTGTAAGAACGAAGGCGGGCAGGGGCTGAGCCCTGAAATGAGACAATTCGGTGCCGTGGGTTTAGTGAAGGTTGCAGTCAGGAGCTCATCGATGGGTGCGGGCTCTTCCAAGTCATAG 1314 0.465 MAMESQLGLIDQSFSTRYSSWVREALEDIPDNFTITDPCISGHPIVFASRGFLKMSGYSKDEVIGKNGRIFQGPGTDRRSVMEIREAIREERTIQISLLNYRKDGTPFWMLFHLSPVFSKEDGRVIHFVAVQVPISRKWRSSGTGFGRNWGNLGEDGSRSQEIVFGSCRREVCTDSVAELGRVRALDSFVDSDNRGLEAEESCEASDLEKRKAEIAINSILSVLTHYSEPTRQLVCGKRCGLSGMGPLGSSLNISLGRIKQSFVLTDPHLHDMPIVYASDAFLNLTGYTRNEVLGSNCRFLSGPDTDAKALCQIRESIQSEQACSVRILNYRCILFYITFDILDEVDSILMFEQPILAIILYFNFRKDGSLFWNLLHISPVRNASGKIAYYVGVQIEEGCKNEGGQGLSPEMRQFGAVGLVKVAVRSSSMGAGSSKS* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00950 437 CDD PAS 271 394 IPR000014 -
Eupl04g00950 437 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 132 IPR035965 -
Eupl04g00950 437 ProSiteProfiles PAS repeat profile. 275 321 IPR000014 -
Eupl04g00950 437 Pfam PAS domain 42 136 IPR000014 -
Eupl04g00950 437 Pfam PAS domain 262 395 IPR000014 -
Eupl04g00950 437 SMART pac_2 95 138 IPR001610 -
Eupl04g00950 437 SMART pac_2 359 398 IPR001610 -
Eupl04g00950 437 Gene3D PAS domain 19 142 - -
Eupl04g00950 437 SUPERFAMILY PYP-like sensor domain (PAS domain) 269 394 IPR035965 -
Eupl04g00950 437 PANTHER PROTEIN TWIN LOV 1 363 427 - -
Eupl04g00950 437 SMART pas_2 250 319 IPR000014 -
Eupl04g00950 437 SMART pas_2 20 93 IPR000014 -
Eupl04g00950 437 Gene3D PAS domain 358 419 - -
Eupl04g00950 437 Gene3D PAS domain 262 333 - -
Eupl04g00950 437 NCBIfam PAS domain S-box protein 23 131 IPR000014 -
Eupl04g00950 437 ProSiteProfiles PAS repeat profile. 18 91 IPR000014 -
Eupl04g00950 437 CDD PAS 45 135 IPR000014 -
Eupl04g00950 437 FunFam Protein TWIN LOV 1 isoform D 32 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00950 Eupl-Chr4 14644341 14656865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00950 17 425 AGC Kinase Gene Family AT5G58140 29.186 4.55e-57 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00950 - - nnu:104596744 626.706