Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00940 ATGACCCGGAAGAGAGAGAGACCCTACCTCTCCGAGCATGTCTCCTCTTCTCTCCCAAAGAGACCTCGCTCCACCATGCCCTTCCCCTCCAAACCAGAAACTCCCGTAGACGAAGAGCCCAACAAACCCACCAAGCAGAACTCAGCGATGGTGATCGTGACCGGCCTCTCCCCTGCGTGCTCTGTTCTCAAGCTCAAATCTCGATTCGAGATGTACGGCTGCATTTCCCGCCTCCGCATCGACCGTGGTATCGGCTACATCACCTTCCGTTCCAAGGACTCCGCTGAGGCCGCCATCGCCGCTGCCTTAGATCCCTACTTAGCCATCACCGTTGAATCCCAAAAGGTACAAGTATCCTGGGCGAATGATCCTGTTCCTGGATGGCAGGAAGGAGTTAAGTTTTCTTCTGACAAGGATCTGCCCTTGTCCAAGCAGCTGCAGCCCGAAATACCTCTAGGCAGACATGGCAAAGTTAATAATAAGCTTGGTACAGGTACAATGAGCCAAAGAAATGGATTAGACTTGCCTTTCAAAGGCAGAGAAATCATTGCTTATGACGATATTCTCTGA 570 0.5175 MTRKRERPYLSEHVSSSLPKRPRSTMPFPSKPETPVDEEPNKPTKQNSAMVIVTGLSPACSVLKLKSRFEMYGCISRLRIDRGIGYITFRSKDSAEAAIAAALDPYLAITVESQKVQVSWANDPVPGWQEGVKFSSDKDLPLSKQLQPEIPLGRHGKVNNKLGTGTMSQRNGLDLPFKGREIIAYDDIL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00940 189 CDD RRM_SF 51 94 - -
Eupl04g00940 189 Gene3D - 36 126 IPR012677 -
Eupl04g00940 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 123 IPR000504 GO:0003723
Eupl04g00940 189 MobiDBLite consensus disorder prediction 1 45 - -
Eupl04g00940 189 SUPERFAMILY RNA-binding domain, RBD 27 127 IPR035979 GO:0003676
Eupl04g00940 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 101 IPR000504 GO:0003723
Eupl04g00940 189 PANTHER GEO13361P1-RELATED 45 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00940 Eupl-Chr4 14526955 14532825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00940 1 189 Homeobox Transcription Factor Family AT1G27050 37.981 4.21e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00940 - - ming:122060398 199.134