Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00939 ATGGGTTTCTTGGTTTGGGTTTTTTCAGCATTTGCAGCTACAACCGTTTTAAGCACTTGCTCTCTAGCTATCACTGAAGATGGTAAGACATTGTTGCAAATCAAAGGGTTTTTGAATGACAATCGAAGCTTTCTCAGTAACTGGAGGGTTTCTGATGCCTCTCCTTGCAACTGGACTGGTATCACTTGCCACCCCCATGATCATCGAGTCCGCTCTATAAACCTACCTTACATGCAACTTGGAGGGATTATATCTCCAAGCATCGGGAAACTTGGTAGATTGCAGAGATTGGCACTTCACAAGAACAGCTTACATGGATCCATTCCTACTGAAATTACCAACTGCACTGATCTCAGAGCACTGTACTTAAGGGCTAATTATCTCCAAGGAAGCATACCACCAGAGCTTGGGAATCTTTCTCATCTCACCATACTGGATCTATCAAGCAATTCACTGAAGGGATCCATACCTCCCTCCATCGGTCGTCTCATACGGTTGCGCTTTCTGAACTTGTCAACCAACTTCTTTTCTGGTGAAATTCCAAATGTTGGAGTTCTGAGCAGTTTCGGAACTAAGTCGTTTATTGGCAATTTAGACCTCTGTGGCCTGCAAATTCAGAAGGCATGTTTAGGTTCTCTGGGATTCCCTGCAGTGCTACCGCACACGGATGGTGATGAAGCACCAGTCCCCAACAAACGCTTCTCTCGTTATCTTAATGGAGTTCTTATTGGTGCAATGTCCACAATGGGTCTTGCACTTGTTGTATTGCTTTGTTTCCTCTGGATTTGCTTACTATCGAAGAAGGAAAGAGCGGCTAAGAAATACACGGAAGTCAATAAGCAAGTTGATCGGGATGCAAGCACCAAGCTCGTCACATTCCATGGTGATCTTCCATATTCCTCATGTGAGATCATAGAAAAGCTCGAGTTACTTGATGAAGAGCATGTGGTGGGGTCAGGAGGATTTGGCACTGTATACAAAATGGTGATGAATGACTGCAGTACATTTGCTGTTAAGAGGATAGATAGAAGTCGTGAAGGTTCTGATCAAATTTTTGAGAGAGAGCTTGAAATTTTGTGTAGCATCAAGCACATAAACCTTGTCAACCTGCGAGGTTATTGCAGACTCCCTTCTGCCAAACTTCTGATCTATGATTATTTGGCTTTGGGCAGCTTAGATCGCATCCTGCATGAAAATGGACAAGAAGAGCAGCCTTTGAACTGGAATGCTCGTTTAAGAATAGCTCTTGGTTCTGCCCGGGGTTTGGCATACTTACACCAAGACTGCTGTCCACGGATAGTGCATCTGGATATAAAATCCAGCAATATACTACTTGACCAAAACCTGGAGCCTCGTGTTTCTGATTTTGGTCTCGCTAAGCTTTTGGTAGACGAGGATGCCCATGTCACCACTGTGGTGGCCGGCACTTTTGGTTATTTGGCGCCAGAGTATCTGCACAGTGGCCGAGCCACTGAGAAGTCGGATGTTTATAGCTTCGGAGTTCTCTTGTTAGAGCTTGTAACTGGGAAGAGACCTACTGATCCATCCTTTGTCAAGAGGGGCTTAAATGTTGTCGGCTGGATGAACACCCTTGTAAGAGAGAACCGGTTGGAGGATATAGTGGATAAAAAGTGCACTGATGCAAATGTGGAGTCCATAGAAGCAGTTCTCGACATTGCCGCAAGGTGCACTGATGCAAATCCAGATGATCGCCCCTTGATGAACCGGGTCTTGCAGATGCTAGAGGAAGTCATGTCACCTTGCCCAAGTGAATTCTATGAATCTCATTCTGATTATTGTTGA 1803 0.4481 MGFLVWVFSAFAATTVLSTCSLAITEDGKTLLQIKGFLNDNRSFLSNWRVSDASPCNWTGITCHPHDHRVRSINLPYMQLGGIISPSIGKLGRLQRLALHKNSLHGSIPTEITNCTDLRALYLRANYLQGSIPPELGNLSHLTILDLSSNSLKGSIPPSIGRLIRLRFLNLSTNFFSGEIPNVGVLSSFGTKSFIGNLDLCGLQIQKACLGSLGFPAVLPHTDGDEAPVPNKRFSRYLNGVLIGAMSTMGLALVVLLCFLWICLLSKKERAAKKYTEVNKQVDRDASTKLVTFHGDLPYSSCEIIEKLELLDEEHVVGSGGFGTVYKMVMNDCSTFAVKRIDRSREGSDQIFERELEILCSIKHINLVNLRGYCRLPSAKLLIYDYLALGSLDRILHENGQEEQPLNWNARLRIALGSARGLAYLHQDCCPRIVHLDIKSSNILLDQNLEPRVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLHSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMNTLVRENRLEDIVDKKCTDANVESIEAVLDIAARCTDANPDDRPLMNRVLQMLEEVMSPCPSEFYESHSDYC* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00939 600 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Eupl04g00939 600 SUPERFAMILY L domain-like 25 213 - -
Eupl04g00939 600 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Eupl04g00939 600 SUPERFAMILY Protein kinase-like (PK-like) 297 582 IPR011009 -
Eupl04g00939 600 SMART serkin_6 311 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00939 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Eupl04g00939 600 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 591 - -
Eupl04g00939 600 Gene3D Transferase(Phosphotransferase) domain 1 387 588 - -
Eupl04g00939 600 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00939 600 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Eupl04g00939 600 Gene3D Phosphorylase Kinase; domain 1 271 386 - -
Eupl04g00939 600 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Eupl04g00939 600 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00939 600 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 68 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00939 Eupl-Chr4 14519064 14526508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00939 8 589 Receptor kinase-like Gene Family AT2G35620 51.966 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Eupl04g00939 Pkinase 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00939 - - psom:113318882 993.03