Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00889 ATGACGGAGGCCCGCCGCGTGGACTGTCATAAAAATATAAAAGACCTCCCTCTCTGTTTTTCTTTTAACGCCTCCCTCTCTGGTCCGTTCTCTCTCTCCGTACAAATGGATTTTCGAGTTTTCCTCTCTCTGTTTCTCTTCTCCTTCCTCATTTGTTTCCCCGATTTCTCTCATTCATCTCTCCTCCCAGACTGGCTTGGAGGAAAGAAGACGCAGGGATCGTACCTTCGATTGAAACAAACGGGTTCTTCTGCTTTCCATCCCACCCGAGTCACCCAACTCTCTTGGAACCCCAGAGCTTTCTTGTATAAGGGATTTCTATCAGACGAGGAATGTGATCACCTCATTAATCTGGCCAAGGATAAGCTGGAGATATCAATGGTGGCAGATAATGAGTCCGGTAAGAGCATAAAAAGTGAAGTTCGGACGAGCTCAGGCATGTTTCTTGGTAAAGCGCAGGATGAAGTTGTTTCAAATATTGAGGCAAGGATTGCTGCTTGGACCTTCCTTCCAGAAGAAAATGGAGAGGCCATGCAAATACTGCACTATGAGCATGGTCAAAAGTATGAGCCGCATTTTGATTATTTCCATGACAAGGCGAATCAAGAACTCGGGGGCCACCGGGTTGCGACAGTACTTATGTACTTGTCTGATGTTGAGAAGGGTGGGGAAACTATCTTCCCTAATTCAGAGGAGAAAGTGAATCAACTGAAGGATGACACCTGGTCTGACTGTGCCAAAAATGGTTATGCAGTGAAAACCAGGAAGGGTGATGCATTACTGTTCTTCAGTCTTCACCCCGATGCAACAACTGATCCAAACAGCTTGCATGGGAGCTGTCCCGTAATTGAGGGCGAGAAGTGGTCTGCAACAAAATGGATTCATGTGAGAGGTTTCGATAAACCAACAAAGCGCAGCTCAAGCGGGGAATGTGTCGATGATGACGTAAACTGTCCCCATTGGGCTGCCACTGGTGAGTGTCAAAGGAACCCCATTTATATGGTGGGTTCTGAAGAATCTCCGGGATATTGTCGGAAGAGTTGCAAGGTATGTTGA 1056 0.4669 MTEARRVDCHKNIKDLPLCFSFNASLSGPFSLSVQMDFRVFLSLFLFSFLICFPDFSHSSLLPDWLGGKKTQGSYLRLKQTGSSAFHPTRVTQLSWNPRAFLYKGFLSDEECDHLINLAKDKLEISMVADNESGKSIKSEVRTSSGMFLGKAQDEVVSNIEARIAAWTFLPEENGEAMQILHYEHGQKYEPHFDYFHDKANQELGGHRVATVLMYLSDVEKGGETIFPNSEEKVNQLKDDTWSDCAKNGYAVKTRKGDALLFFSLHPDATTDPNSLHGSCPVIEGEKWSATKWIHVRGFDKPTKRSSSGECVDDDVNCPHWAATGECQRNPIYMVGSEESPGYCRKSCKVC* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00889 351 ProSiteProfiles ShKT domain profile. 311 351 IPR003582 -
Eupl04g00889 351 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 84 297 IPR045054 -
Eupl04g00889 351 SMART p4hc 98 295 IPR006620 GO:0005506|GO:0016705|GO:0031418
Eupl04g00889 351 FunFam Prolyl 4-hydroxylase 4 90 296 - -
Eupl04g00889 351 Pfam 2OG-Fe(II) oxygenase superfamily 178 295 IPR044862 -
Eupl04g00889 351 Gene3D q2cbj1_9rhob like domain 90 296 - -
Eupl04g00889 351 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 174 296 IPR005123 -
Eupl04g00889 351 SMART ShkT_1 310 351 IPR003582 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00889 Eupl-Chr4 13626255 13637703 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl04g00889 2OG-FeII_Oxy_3 9.6e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00889 K00472 - nnu:104596367 520.776