Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00885 ATGGGGAGACCTCCTTGTTGCGATAAATCGAATGTGAAGAGGGGTCTTTGGACCGCAGAGGAGGATGCGAAGATACTTGCGCACGTATCGACCCATGGAACGGGTAACTGGACATCTGTTCCAAAGAAAGCAGGACTTAAAAGGTGTGGGAAGAGCGTTCGTCTTCGATGGACTAATTATCTGAGGCCTGATCTAAAGCATGAAGGCTTCACACCTCAAGAAGAACAGATGATTCTTAATCTTCATGCAGCCATAGGAAGCAGGTGGTCACTGATAGCAGCCCAACTGCCAGGAAGAACAGACAACGATGTGAAGAACCACTGGAACACAAAACTGAGGAAGAAGCTGTTCGAGATGGGAATTGATCCGGTGACCCACAAACCCTTCTCTCAGATCCTTGCTGACTATGGGAACATTGGTGGTCTCCCTAAAGCTGGAACGCGTATGGGATCTCTTAATAGAGACTTAAAAACGCATTCATGTCAAAATCAGAACTATCTCCACTCCCACAAGAAGCCATTTCAGACATCAATAGTCATTCCATGA 546 0.4652 MGRPPCCDKSNVKRGLWTAEEDAKILAHVSTHGTGNWTSVPKKAGLKRCGKSVRLRWTNYLRPDLKHEGFTPQEEQMILNLHAAIGSRWSLIAAQLPGRTDNDVKNHWNTKLRKKLFEMGIDPVTHKPFSQILADYGNIGGLPKAGTRMGSLNRDLKTHSCQNQNYLHSHKKPFQTSIVIP* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00885 181 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl04g00885 181 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl04g00885 181 Pfam Myb-like DNA-binding domain 70 110 IPR001005 -
Eupl04g00885 181 SMART sant 13 63 IPR001005 -
Eupl04g00885 181 SMART sant 66 114 IPR001005 -
Eupl04g00885 181 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Eupl04g00885 181 FunFam transcription factor MYB80 69 129 - -
Eupl04g00885 181 CDD SANT 17 61 IPR001005 -
Eupl04g00885 181 CDD SANT 70 112 IPR001005 -
Eupl04g00885 181 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl04g00885 181 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Eupl04g00885 181 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Eupl04g00885 181 FunFam Transcription factor RAX3 7 67 - -
Eupl04g00885 181 Gene3D - 69 116 - -
Eupl04g00885 181 PANTHER F14D16.11-RELATED 1 165 - -
Eupl04g00885 181 Gene3D - 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00885 Eupl-Chr4 13603913 13605400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00885 1 160 MYB Transcription Factor Family AT3G28470 70.000 1.47e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl04g00885 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00885 K09422 - nnu:104602824 308.916