Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00866 ATGTCGCGCAGCTGCTCGCAGTGCGGCAACAACGGCCATAACTCCCGTACCTGCGCCGAGAGTACTGGATGTGGTGGTGGCGCCTCCGCTGCTGCATCGGGAGGGTTCATGCTCTTCGGTGTTCGAGTCACAGAGGGCTCGTTTAGGAAGAGTGTCAGCATGAACAATCTCTCTCAGTACGAGCAACCTCACGAGCCCAACGCCGATGTTGCCGCTGGTTACGCTTCCGATGACGTGGTTCACGCCTCCGCCAGAAATCGAGATCGCAAGAGAGGAGTTCCATGGACGGAAGAAGAACACCGGCTTTTCCTTCTAGGTCTGCAGAAGGTAGGGAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTGAAGACTCGAACACCTACACAAGTAGCCAGCCATGCTCAGAAGTACTTCCTCCGGAGAAATAATCTCAACCGGAGACGCCGCAGATCTAGTCTTTTCGACATCACCACCGATACGTTCATGGGATCACCAATAGAAGAAGAATCTGTTCACCAAGAGCCAACACCTCAAGTGAACTGCAATTTAGGATTTCCGGTGCCGGCTTTTCCTATTACCCTTGGACCCGTGGTGTTACCGGAGAACCCGACGGAGGATCTGACATTAGGACAAAGCGATCTGACGCAGATGCCGGCAAAAATCGTCCGTCCGATACCTGTACTACCGATTCCACCTTCATCAAGGATGGCGGATCTAAATTTGAATCAGAAATCAACGATTGATCCATCGGCTTTGTCTCTCAAGCTCTCTACTTCGTCAGATCAACAGCCATCGTCGAGACTCTCTGCTTTTCAGGCCATGTCAAGCTTCAGCGCCGGTGATCTTGATTCGAAGGGCGGAAGCATTATTAGTGTTGCTTGA 885 0.5164 MSRSCSQCGNNGHNSRTCAESTGCGGGASAAASGGFMLFGVRVTEGSFRKSVSMNNLSQYEQPHEPNADVAAGYASDDVVHASARNRDRKRGVPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNLNRRRRRSSLFDITTDTFMGSPIEEESVHQEPTPQVNCNLGFPVPAFPITLGPVVLPENPTEDLTLGQSDLTQMPAKIVRPIPVLPIPPSSRMADLNLNQKSTIDPSALSLKLSTSSDQQPSSRLSAFQAMSSFSAGDLDSKGGSIISVA* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00866 294 ProSiteProfiles SANT domain profile. 90 143 IPR017884 -
Eupl04g00866 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Eupl04g00866 294 MobiDBLite consensus disorder prediction 1 22 - -
Eupl04g00866 294 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Eupl04g00866 294 CDD SANT 94 139 IPR001005 -
Eupl04g00866 294 SMART sant 91 141 IPR001005 -
Eupl04g00866 294 MobiDBLite consensus disorder prediction 1 24 - -
Eupl04g00866 294 Gene3D - 93 145 - -
Eupl04g00866 294 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Eupl04g00866 294 PANTHER TRANSCRIPTION FACTOR KUA1 1 231 - -
Eupl04g00866 294 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
Eupl04g00866 294 FunFam transcription factor MYB1R1 93 144 - -
Eupl04g00866 294 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Eupl04g00866 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00866 Eupl-Chr4 13299149 13300698 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl04g00866 Myb_DNA-binding 8.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00866 - - nnu:104596258 431.409