Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00857 ATGGGATTCAAACTCAACCAGCCTCATCTCTCTTCTTCAATGAATCAATTTGATCCATCGGATCTACCTCGAGAAGCACACCATGTCACCAAGATGAATGATGCTCTTACCTTTCTCAACTCAGTGAAGCACACCTTTCGCGACGATATAGTGAAATACCACTCCATCCTCCAAATCCTGACAGATTGCCACGAGGAAAGAATTGATATTGTGGAAGTTTTTACAAGGGTGACAGAGCTACTCAGAGGACACTATGATCTTATTGAGGGTTTCATTGCCTTCATGCCCGTAGGACGCGAGATCACCTCTCCGTATTAA 318 0.4403 MGFKLNQPHLSSSMNQFDPSDLPREAHHVTKMNDALTFLNSVKHTFRDDIVKYHSILQILTDCHEERIDIVEVFTRVTELLRGHYDLIEGFIAFMPVGREITSPY* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00857 105 ProSiteProfiles PAH domain profile. 28 98 IPR003822 GO:0006355
Eupl04g00857 105 Pfam Paired amphipathic helix repeat 52 94 IPR003822 GO:0006355
Eupl04g00857 105 SUPERFAMILY PAH2 domain 31 96 IPR036600 GO:0006355
Eupl04g00857 105 FunFam Paired amphipathic helix protein Sin3 34 96 - -
Eupl04g00857 105 PANTHER SIN3B-RELATED 31 102 IPR039774 GO:0003714
Eupl04g00857 105 Gene3D Paired amphipathic helix 34 96 IPR036600 GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00857 34 102 WRKY Transcription Factor Family AT4G12020 37.681 2.49e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Eupl04g00857 PAH 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00857 K11644 - mof:131144137 71.2478