Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00856 ATGAAAAGGTCCAGAGAGGACGTTTACATGGGTTCTCAACTTAAACGCCCCGTTATTTCATCTCGAGGTGAAGCCTCTGGGCAACCCCAAGTCCCTGGAGGAGGAGGAGGAGGAGGAGGAGGGACACAGATATTAACAACTAATGATGCCCTAGCCTATCTTAAGGCTGTAAAGGACATCTTTCAGGATAAAAGGGAGAAATACGATGAGTTCCTTGAAGTCATGAAAGATTTCAAGGCCCAAAGAATTGACACAGCAGGTGTTATATCAAGGGTGAAAGAATTGTTCAAAGGGCATCGAGACCTTATTTTGGGCTTCAATACCTTCTTGCCCAAAGGTTATGAGATCACCCTCCCTCTTGAATCTGACGAGCCTCCACCAAAGAAGCCTGTTGAATTTGAGGAAGCCATCAATTTTGTAAACAAAATAAAGACACGATTCCAAAATGATGATCACGTGTACAAATCATTCTTAGATATACTGAATATGTATCGAAAGGAGAACAAGTCCATTACCGAGGTCTACCAAGAGGGAGAACTTCGTTGTGGGAAGCTCTTTCATTGTTCTCGAAAATCAAGTTCAGTTTCTTTGCAGGTGGCAGCTCTTTTCAACCACCATCCAGACTTGCTTGAGGAGTTCACACATTTCCTACCGGATACTTCAACAACAGCCCCTATGCAGCATGCTCCATCAGTCAGAAACTCACCTTTTCTGCGACGGGATGAGAAGAGCTCTGCTATGCCCACGTTGCGGCAAATGCATGGGGACAAGAGGGAGAGAACTATGACTTCCCATGCCAACCGTGATCTGAGTGTTGACCGTCCTGATCCTGACCATGATAAAGGAATGATGAAAATGGACAAAGAGCAGCGGAAACGTTCTGAGAAGGAAAAAGAGAGGAAGGAAGATAGGGATAGGAGAGACCGTGATCGGGACGATAAGGATCTAGAACATGACAGCAATAGGGACTTCAACAACATGCAGCGTCTTCCCCACAAACGGAAATCTGCTCGGAGAGTTGAAGACTCTGTTGCTGAGCAATTACACCAAGGTGGGGAAGGCGCTGAGAACTTTGGAATGCATCCCATTTTGTCTTCTTATGATGATAAAAATGCCTTGAAAAGTGTATACAATCAAGAATTCATTTTCTGTGAGAAAGTGAAGGAGAAGTTACGGAATTCTGATGATTACCAGGAATTCTTGAAATGCCTGCATATTTATAGCACGGAAATTATTACGAGATCCGAATTGCAGACATTGATGGGTGATTTGCTTGGAAAATATCCGGACCTTATGGAAGGGTTCAATGAATTTTTGACACGTTGTGAGAAGATCGATGGATTCCTGGCCGGAGTTATGAGTAAAAAATCCTTGTGGAGTGAAGGACATTTACCCAAACCGGTGAAGGTAGAGGACAGGGATAAAGAGCGGGAGCGTGAAAGGGATGACAGAGACAAAGATAGAGACCGTGAAAGGGAGAGGGAGAGGGATAGAGATAGGGAAAGAATTGATAGAAATGTAGGTCCAGCAGGTCACAAAGTTCCATTTCCAAACAAGGATAAGTATATGGCTAAACCCATTTCCGAGCTCGACCTCTCTAACTGTCAGCGTTGTACCCCGAGTTACCGGCTTCTTCCAAAGAATTATCCAACACCTTCTGCAAGCCAGAGGACAGAGCTTGGTGCTCAAGTATTGAATGATTGTTGGGTATCAGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACACATGCGCAAAAACCAATATGAAGAAAGTCTGTTTAGATGTGAAGACGATAGGTTTGAATTGGACATGTTATTAGAGTCAGTGAATGTGACAACAAAGCGTGTCGAGGAATTGTGGGACAAGATCAATGATAATACGATCAAACCAGACAGTCCAATTCGTATCGAGGACCACTTTACAGCTCTAAACCTAAGGTGCATTGAACGCTTATATGGTGACCATGGGCTGGATGTGATGGATGTATTACGCAAGAATGGAACTCTTGCATTGCCTGTTATATTAACTCGCTTGAAGCAGAAGCAAGAGGAGTGGTCAAGGTGTCGTTCAGATTTTAATAAGGTTTGGGCTGAAATTTATTCTAAGAACTATCACAAATCGCTTGATCATCGTAGCTTCTATTTCAAACAACAAGATACAAAGAGCTTGAGCACAAAAGCTTTACTGGCCGAGATTAAAGAAATCAATGAGAAGAAGCATAAGGAGGATGATGTGCTTCTGGCAATTGCTGCTGGGAACAGACGGCCTATAATTCCAAACCTGGAATTTGAGTACTCTGATTCAGATATTCATGAAGACTTATATCAGCTCATCAAATATTCATGTGGGGAAATTTGCACAACTACAGAACAGTTGGATAAAGTTATGAGGATTTGGACAACCTTCTTAGAGCCCATGCTGGGCGTTCCTCCTCGACCGCAGGGTGCAGAGGACACTGAAGATGTTGTAAAGGATAAGAATCATGTTGTCAGAAGTAGTGTAGCAAGTATAGCAGAAAGTGATGGCAGTCCGGGTGCTGATGTTGCCAACACTAATTCCAAGCAACTAAACCATCCCAGCAATGGGGATGACAACACTCCTCCTGAACAAGCAAGTTCTTGCAGAGTTAGGTTGGTAAATGGGGATGCAGCTAAAGAAGATGGTTTTCACGACATAGATGGGAGTGCCCGTAGGAGTGATACTTTCTGTAGTACTTCTCAGCACAGGAAAGTGCAGAATAATGTCCCCATGGCTGACGAAATATCAGGAGTCAACGTACAAGCTACCTCTAACGAGCGGCTAACCGATTCTAATGCCTCACTTGCTATAAGAGCAGAACAAATTCATGGTAGAACCAACATGGAAATTACATCAGGGCTTAGCAACACACCTGTCAGGCCTGGTCATGCTGCTGTCGAGGGAGGGCTTGAGCCCAGACTTAATAATGAAGCTTTACCTTCATCAGAGGGTGGGGATAGTACAAGACCCGTTATATCGGCAAACGGGGTGCTGACAGAAGGCACCAAAGTCAACAGGTATCATGAGGATTCTGTTGGGCACTTCAAAATAGAAAGAGAAGAGGGTGAACTATCACCCAACGGAGATTTTGAAGAGGATAATTTTGCAGTCTATGGAGATGCTGGCACAAATTCTGTGCCTAAAACAAAGGATGGTGCCACAAGCAGGCAATATCAAGCCAGGCATGGACAACAGGAAGAAATATGTTGTGGAGAGGCAGGAGGAGAAAATGATGCAGATGCTGATGATGAGGGCGAGGAAAGTGCACAAAGGTCGACAGAGGACAGCGAGAATGCTTCTGAGGCTGGTGAAGATGTTTCAGGGAGTGAGTCTGGTGACGGTGAGTGCTCCCGTGAGGATCACGAGGAAGAGGAGGAAGATGTAGACCATGATGACCATGACACTAAGGCTGAAAGTGAAGGTGAGGCTGAAGGGATGGCTGATGCACATGATGTGGAAGGAGATGGCATGTCATTGCCGTTTTCAGAACGTTTTCTACTCACAGTGAAGCCTCTTGCAAAGCATGTCCCATCAGCATTACATGACAAAGAAAAGAAAGATTCTCGGATTTTTTATGGAAATGATTCCTTTTATGTGCTCTTTAGGCTTCATCAAACACTGTATGAGAGAATACTGTCAGCAAAGATGAACTCGTCATCTGTTGAAAGGAAATGGAGAGCTTTAAAGGATACGAGCTCTCCTGACCTCTATGCCAGATTTATGAGTGCACTATATAATCTACTTGATGGTTCTGCTGACAATACAAAGTTTGAGGATGATTGTCGTGCTATTATTGGAACTCAGTCATACGTGCTATTCACTTTGGACAAGTTGATATACAAACTTGTCAAGCAGCTTCAAACAGTTGCAACTGATGAGATGGACAATAAGCTGCTTCAACTATATGCATATGAAAAATCAAGGCAACCAGGGAGATTTGTTGATTTAGTTTATCACGAGAATGCTCGCGTTCTTCTTCATGATGAGAGCATCTATCGATTTGAATGTTCATCCAGTCCGACCCGTTTGTCTATCCAGCTAATGGACTATGGGCATGAAAAGCCTGAAGTGACTGCTGTTTCCATGGACCCTAATTTTGCAGCTTATCTACACAATGACTTCCTGTCAGTTGTTCCTGACAGAAAGGAGATGCATGGTGTCTTCCTTGGAAGAAATAAACGCAAATATGCATGTGGGGATGAATTTTCTGCTACATGCAAGGCCATGGAGGGAGTTCGCGTGGTCAATGGTCTCGAGTGTAAGATAGCTTGCAATTCATCCAAGGTCTCCTACGTATTGGACACGGAAGACTTGTTGTTTCGCATGAGAAGGAAAAGGAGAAGTATGTCTGGGGGCAGTTCTTTGTGCCATGACCAGGCGAAGTCATCAAATGGTTCTGCTCTAAGAGTACATCGGTTCCACAGATTGTTATCTGGCTCCTAA 4464 0.4391 MKRSREDVYMGSQLKRPVISSRGEASGQPQVPGGGGGGGGGTQILTTNDALAYLKAVKDIFQDKREKYDEFLEVMKDFKAQRIDTAGVISRVKELFKGHRDLILGFNTFLPKGYEITLPLESDEPPPKKPVEFEEAINFVNKIKTRFQNDDHVYKSFLDILNMYRKENKSITEVYQEGELRCGKLFHCSRKSSSVSLQVAALFNHHPDLLEEFTHFLPDTSTTAPMQHAPSVRNSPFLRRDEKSSAMPTLRQMHGDKRERTMTSHANRDLSVDRPDPDHDKGMMKMDKEQRKRSEKEKERKEDRDRRDRDRDDKDLEHDSNRDFNNMQRLPHKRKSARRVEDSVAEQLHQGGEGAENFGMHPILSSYDDKNALKSVYNQEFIFCEKVKEKLRNSDDYQEFLKCLHIYSTEIITRSELQTLMGDLLGKYPDLMEGFNEFLTRCEKIDGFLAGVMSKKSLWSEGHLPKPVKVEDRDKERERERDDRDKDRDRERERERDRDRERIDRNVGPAGHKVPFPNKDKYMAKPISELDLSNCQRCTPSYRLLPKNYPTPSASQRTELGAQVLNDCWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELWDKINDNTIKPDSPIRIEDHFTALNLRCIERLYGDHGLDVMDVLRKNGTLALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEINEKKHKEDDVLLAIAAGNRRPIIPNLEFEYSDSDIHEDLYQLIKYSCGEICTTTEQLDKVMRIWTTFLEPMLGVPPRPQGAEDTEDVVKDKNHVVRSSVASIAESDGSPGADVANTNSKQLNHPSNGDDNTPPEQASSCRVRLVNGDAAKEDGFHDIDGSARRSDTFCSTSQHRKVQNNVPMADEISGVNVQATSNERLTDSNASLAIRAEQIHGRTNMEITSGLSNTPVRPGHAAVEGGLEPRLNNEALPSSEGGDSTRPVISANGVLTEGTKVNRYHEDSVGHFKIEREEGELSPNGDFEEDNFAVYGDAGTNSVPKTKDGATSRQYQARHGQQEEICCGEAGGENDADADDEGEESAQRSTEDSENASEAGEDVSGSESGDGECSREDHEEEEEDVDHDDHDTKAESEGEAEGMADAHDVEGDGMSLPFSERFLLTVKPLAKHVPSALHDKEKKDSRIFYGNDSFYVLFRLHQTLYERILSAKMNSSSVERKWRALKDTSSPDLYARFMSALYNLLDGSADNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVATDEMDNKLLQLYAYEKSRQPGRFVDLVYHENARVLLHDESIYRFECSSSPTRLSIQLMDYGHEKPEVTAVSMDPNFAAYLHNDFLSVVPDRKEMHGVFLGRNKRKYACGDEFSATCKAMEGVRVVNGLECKIACNSSKVSYVLDTEDLLFRMRRKRRSMSGGSSLCHDQAKSSNGSALRVHRFHRLLSGS* 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 221 340 - -
Eupl04g00856 1487 Pfam Sin3 family co-repressor 536 628 IPR013194 -
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 469 508 - -
Eupl04g00856 1487 SUPERFAMILY PAH2 domain 45 112 IPR036600 GO:0006355
Eupl04g00856 1487 SUPERFAMILY PAH2 domain 125 219 IPR036600 GO:0006355
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 1054 1069 - -
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 1124 1138 - -
Eupl04g00856 1487 ProSiteProfiles PAH domain profile. 43 113 IPR003822 GO:0006355
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 469 520 - -
Eupl04g00856 1487 FunFam Paired amphipathic helix SIN3-like protein 128 220 - -
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 987 1003 - -
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 958 1003 - -
Eupl04g00856 1487 PANTHER SIN3B-RELATED 45 1342 IPR039774 GO:0003714
Eupl04g00856 1487 Coils Coil 284 306 - -
Eupl04g00856 1487 Gene3D Paired amphipathic helix 49 111 IPR036600 GO:0006355
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 1 42 - -
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 1024 1162 - -
Eupl04g00856 1487 ProSiteProfiles PAH domain profile. 373 442 IPR003822 GO:0006355
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 1083 1097 - -
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 1139 1158 - -
Eupl04g00856 1487 Pfam Paired amphipathic helix repeat 395 439 IPR003822 GO:0006355
Eupl04g00856 1487 Pfam Paired amphipathic helix repeat 66 110 IPR003822 GO:0006355
Eupl04g00856 1487 Pfam Paired amphipathic helix repeat 152 217 IPR003822 GO:0006355
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 836 873 - -
Eupl04g00856 1487 Gene3D Paired amphipathic helix 370 444 IPR036600 GO:0006355
Eupl04g00856 1487 FunFam Paired amphipathic helix protein SIN3 370 444 - -
Eupl04g00856 1487 ProSiteProfiles PAH domain profile. 129 220 IPR003822 GO:0006355
Eupl04g00856 1487 SUPERFAMILY PAH2 domain 373 440 IPR036600 GO:0006355
Eupl04g00856 1487 SMART hdac_interact2seq4b 534 634 IPR013194 -
Eupl04g00856 1487 Pfam C-terminal domain of Sin3a protein 1198 1446 IPR031693 -
Eupl04g00856 1487 Gene3D Paired amphipathic helix 128 221 IPR036600 GO:0006355
Eupl04g00856 1487 FunFam Paired amphipathic helix protein Sin3 49 111 - -
Eupl04g00856 1487 MobiDBLite consensus disorder prediction 235 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00856 Eupl-Chr4 13053991 13067231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00856 28 148 WRKY Transcription Factor Family AT4G12020 50.413 2.00e-24 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Eupl04g00856 Sin3a_C 3.9e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00856 K11644 - nnu:104596135 2263.03