Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00841 ATGGATGGATCAATTGAGAAGATGCCTTCTTCGTCTTCCTTGTCTTCATTTCGAGAATCTGGAACTAGGAATCATTCCTATAGCAGGAAAGAGAAATCCCTCGGACTTTTGTGCACCAACTTCCTGAGCTTGTACAACCGAGACGATGTTGAATCGGTTGGATTGGATGATGCCGCGAGACGATTAGGGGTCGAGCGACGACGGATCTACGATATTGTCAATGTATTGGAAAGCGTTGGTGTTCTCGCGAGGAAAGCGAAGAATCAATACTCTTGGAAAGGTTTTGGAGGAATCCCTGAGGCTTTAAATGAGCTTAAGGAAGATGCTACAAGGGAAAACGGCTTCGATATCTTCGATGCCAGCAACTATGCAAAAATTTCAGATGATGATGAAGATGAAAGATCCTTCGATCCGAACACAGCTGGTAGGCAAGATAAATCAAGCTCTAGCTCTGTTCTCCTTAAGACCTCTTCATCCTCTAAAATTGATGTTGTTTGTACAGACAACAGAAGAGAGAAGTCTCTGGGTCTTCTAACCCAGAATTTCGTCAAGCTCTTCCTCTGCAGTAATGCTGACCTGGTCTCCCTTGATGATGCTGCAAAGTTATTACTCGGCGACGCCCACAATTCATCGCAGATGCGAAATAACTCTGCAGCAAAAGTTAGACGATTGTATGACATTGCAAACGTGTTGTCTTCCATGAATCTCATCGAAAAGACCCATCAAACAGAGAGCAGGAAACCTGCATTCAGATGGTTGGGGATTGATGGAAAATCCAAGAACAGATCTGCCAGGTCTCCGGATTTAAAGAAAAGGGTATTTGGGACTGAGATTACAAACACCAATATTAAGAAGACTAAGGTGTTTTCTTCAATTGACGAGAGACCGAACCAGAAGATCCAAACGCAGGTGAAATGTGAGGATTTGACAGATGAAATTGATCACAAACAGATGCAACAGCACCTACAGTCAAAACAGAGCTCTAAGGGTGTTGTTTTTGGTCCTTTCAGTCCCGTTGGTTTGCCCAAAGTTGGTGACACTGAGAATAAGAATGCGAAAAGGGTTCATGACTGGGAGAGCCTAGCCTCCTCCTATCGACCTCAATATCAAAACCAAGCGTTGAGTGACCTATTTGCTCATTACATGGAGGCATGGAAGTCGTGGTACGTCGAAGTCGCCGGGAAGCAACCAATACAACAATTTTCCTGA 1209 0.4409 MDGSIEKMPSSSSLSSFRESGTRNHSYSRKEKSLGLLCTNFLSLYNRDDVESVGLDDAARRLGVERRRIYDIVNVLESVGVLARKAKNQYSWKGFGGIPEALNELKEDATRENGFDIFDASNYAKISDDDEDERSFDPNTAGRQDKSSSSSVLLKTSSSSKIDVVCTDNRREKSLGLLTQNFVKLFLCSNADLVSLDDAAKLLLGDAHNSSQMRNNSAAKVRRLYDIANVLSSMNLIEKTHQTESRKPAFRWLGIDGKSKNRSARSPDLKKRVFGTEITNTNIKKTKVFSSIDERPNQKIQTQVKCEDLTDEIDHKQMQQHLQSKQSSKGVVFGPFSPVGLPKVGDTENKNAKRVHDWESLASSYRPQYQNQALSDLFAHYMEAWKSWYVEVAGKQPIQQFS* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00841 402 SUPERFAMILY "Winged helix" DNA-binding domain 172 255 IPR036390 -
Eupl04g00841 402 FunFam E2F transcription factor-like E2FE 165 256 - -
Eupl04g00841 402 FunFam E2F transcription factor 8 24 96 - -
Eupl04g00841 402 MobiDBLite consensus disorder prediction 128 154 - -
Eupl04g00841 402 MobiDBLite consensus disorder prediction 1 22 - -
Eupl04g00841 402 SMART E2F_TDP_2 170 254 IPR003316 GO:0005667|GO:0006355
Eupl04g00841 402 SMART E2F_TDP_2 29 94 IPR003316 GO:0005667|GO:0006355
Eupl04g00841 402 SUPERFAMILY "Winged helix" DNA-binding domain 28 92 IPR036390 -
Eupl04g00841 402 PANTHER TRANSCRIPTION FACTOR E2F 13 370 IPR015633 GO:0000978|GO:0006357
Eupl04g00841 402 MobiDBLite consensus disorder prediction 1 23 - -
Eupl04g00841 402 Pfam E2F/DP family winged-helix DNA-binding domain 30 94 IPR003316 GO:0005667|GO:0006355
Eupl04g00841 402 Pfam E2F/DP family winged-helix DNA-binding domain 172 254 IPR003316 GO:0005667|GO:0006355
Eupl04g00841 402 Gene3D - 24 97 IPR036388 -
Eupl04g00841 402 Gene3D - 165 256 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00841 Eupl-Chr4 12890055 12894943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00841 24 398 E2F-DP Transcription Factor Family AT3G48160 54.712 2.44e-126 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Eupl04g00841 E2F_TDP 2.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00841 K09391 - nnu:104607984 536.184