Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00822 ATGGGTAGTGCCAAGAACAGGTGGAAGATCTCCTTCCACCGATCTCCTTCTGCTTCTAAACCTCCCCCAAAGGAATTCGTCTGTCCGATTTCTGGGTCTTTAATGGCGGATCCGGTAATCGTTTCTTCAGGTCAGACCTTCGAGCGGAACTGCGTTCAAATTTGTGTTAACTTACGTTTTACACCGGTCCTCTTTGACGGCTCAAAACCCGATTTTTCTACTGTAATCACCAACATCAACTTAAAATCGACAATTCTCAACTGGTGCGAGGCTTCTGGTGTCGAACGGCCGAAACCCCTTGAATTCGGCGTCGTGGAGAAGATTGTCCGTACATTAATGGCGTCTCAAGAGGAAAACAAGAAAGTAGAAGAAAATTCGGAGATGAATCGAGAGGGAAAGATTGAAGTTTCGGAGAAGGAGTTGCTTAAAGCGATTGCGGAGAACCCACCGGTGAAATTTTCCTACGCGGCGACTGAGGTGAATCGTCGGGCGAGTCACTTCTACTCAAGCTCGGAGGAATTTGTAACCACGACGATTCCGACTACGCCTCTGCCTTTCGCGACTCGGCCCTCGTGTTATTCTTCTTCGTCGTCTTCCGAGATCGTTGCAGAAGATACCGGAAACCCTAATTTGTCTGAAGAGGAGGAGATCGTCGTTAAGCTTAAGAGCTCTCAAGTGTTCGAGCAAGAAGAAGCCGTGATCTCATTACGAAAGATCACGAGAACTAACGAAGAAATCAGGGTTCCTCTCTGCACTCCTCGATTACTCTCGGCCCTCCGATCTGTCATGGTCTCACGGTACTCTACTATTCAGATAAACGCAGTTGCAGCTTTGGTGAATCTTTCGTTGGAGAAGATCAACAAGGTGAAGATCGTACGGTCGGGGATGGTCCCGCTGTTGATCGACGTGTTAAAGGGAGGATTCTCTGAAGCGCAGGAACACGCGGCCGGTGCACTCTTCAGTTTAGCCCTTGATGACGAGAACAAAACGGCGATAGGCGTTTTAGGCGCATTGCCGCCTCTCCTCCACACGCTCCGATCGGAGAGCGAGCGGGCGCGGCATGACTCGGCACTTGCTTTGTATAACCTTTCACTCGATCAGAGTAACCGATCCAAACTAGTGAAACTCGGTTCGGTCCCAATGCTGTTAGCTATGGCGAAGGCCCCAGGGGGTCTAGCAAGCCGGGCATTGCTCATACTATGCAATTTAGCAAATTGCACTGAAGGGCGCGCAGCAATGCTGGACGCCAATGCAGTTGAGTGCTTTGTGGAGATGTTGAGATGGGAGGTGTTGGACTCGGAGGCGACTCGGGAGAATTGTGTGGCGGCGTTGTATGCACTGAGTCATGGAAGTTTAAGGTTTAAAGGTTTGGCGAAGGAGGCAGGAGCGGTGGAGGTGTTGAGGGAGGTGGCGGAGAGAGGAAATGAGAGGGCGAGAGAGAAAGCGAAGAAGATGTTACAGATGATGAGAGGTAGAAAAGAAAGTGAAGAAGAGGACGAAGTGGAGGACTCGGAGGCACTGAGTCGGAGTCGTTACCGAGTGGCCTGTGGGAAGAACGTGGCAGGTGCAAACTCGACCGAGTTTTAA 1587 0.506 MGSAKNRWKISFHRSPSASKPPPKEFVCPISGSLMADPVIVSSGQTFERNCVQICVNLRFTPVLFDGSKPDFSTVITNINLKSTILNWCEASGVERPKPLEFGVVEKIVRTLMASQEENKKVEENSEMNREGKIEVSEKELLKAIAENPPVKFSYAATEVNRRASHFYSSSEEFVTTTIPTTPLPFATRPSCYSSSSSSEIVAEDTGNPNLSEEEEIVVKLKSSQVFEQEEAVISLRKITRTNEEIRVPLCTPRLLSALRSVMVSRYSTIQINAVAALVNLSLEKINKVKIVRSGMVPLLIDVLKGGFSEAQEHAAGALFSLALDDENKTAIGVLGALPPLLHTLRSESERARHDSALALYNLSLDQSNRSKLVKLGSVPMLLAMAKAPGGLASRALLILCNLANCTEGRAAMLDANAVECFVEMLRWEVLDSEATRENCVAALYALSHGSLRFKGLAKEAGAVEVLREVAERGNERAREKAKKMLQMMRGRKESEEEDEVEDSEALSRSRYRVACGKNVAGANSTEF* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00822 528 Coils Coil 105 125 - -
Eupl04g00822 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Eupl04g00822 528 Pfam U-box domain 23 91 IPR003613 GO:0004842|GO:0016567
Eupl04g00822 528 Coils Coil 479 499 - -
Eupl04g00822 528 ProSiteProfiles U-box domain profile. 21 95 IPR003613 GO:0004842|GO:0016567
Eupl04g00822 528 Gene3D - 213 329 IPR011989 -
Eupl04g00822 528 Pfam Armadillo/beta-catenin-like repeat 325 364 IPR000225 GO:0005515
Eupl04g00822 528 PANTHER U BOX DOMAIN-CONTAINING 22 492 - -
Eupl04g00822 528 FunFam RING-type E3 ubiquitin transferase 212 489 - -
Eupl04g00822 528 SUPERFAMILY RING/U-box 13 99 - -
Eupl04g00822 528 SMART Ubox_2 25 88 IPR003613 GO:0004842|GO:0016567
Eupl04g00822 528 SUPERFAMILY ARM repeat 220 489 IPR016024 -
Eupl04g00822 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 97 IPR013083 -
Eupl04g00822 528 MobiDBLite consensus disorder prediction 1 24 - -
Eupl04g00822 528 MobiDBLite consensus disorder prediction 488 508 - -
Eupl04g00822 528 SMART arm_5 243 283 IPR000225 GO:0005515
Eupl04g00822 528 SMART arm_5 284 324 IPR000225 GO:0005515
Eupl04g00822 528 SMART arm_5 366 405 IPR000225 GO:0005515
Eupl04g00822 528 SMART arm_5 406 449 IPR000225 GO:0005515
Eupl04g00822 528 SMART arm_5 325 365 IPR000225 GO:0005515
Eupl04g00822 528 Gene3D - 330 500 IPR011989 -
Eupl04g00822 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 295 332 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00822 Eupl-Chr4 12608363 12610544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00822 22 528 U-box Gene Family AT5G65200 54.731 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00822 - - nnu:104607960 708.753