LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl04g00807	ATGGCGACTTTTGCAGGAACGACCCAGAAATGCAAAGCCTGCGAGAAGACAGTATACTTGGTGGATCAGCTCACAGCTGATAACAAGGTCTATCACAAAGCTTGCTTCCGCTGCCATCACTGCAAGGGTACCCTCAAGCTCAGTAACTATTCCTCCTTTGAGGGTGTTCTGTATTGCAAACCTCACTTTGACCAACTGTTTAAGATGACCGGCAGTTTGGACAAAAGTTTTGAAAGTGCTCCTAAAGTTGTTAAAGTTGACAGATCCGTTGATCAGGGCCCTGCCTACAACAAAGTTTCAAGTATGTTTGCTGGAACTCAAGACAAGTGTGTTGCTTGCACGAAAACCGTGTACCCGATTGAGAAGGTAGCGGTCGACGGCACCTCATACCATAGGGCTTGTTTCAAGTGTACCCGTGGGGGTTGTGTGATCAGCCCATCTAACTACATTGCCCATGAGCACAGACTCTACTGTAGGCACCACCACTCTCAGCTCTTCAAGGAGAAGGGGAACTTTAGCCAGTTTGATAAGCATGAACAACTTAAAGGGGTGCCTGAGAACACTGTTTCCGAGTGA	576	0.474	MATFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYSSFEGVLYCKPHFDQLFKMTGSLDKSFESAPKVVKVDRSVDQGPAYNKVSSMFAGTQDKCVACTKTVYPIEKVAVDGTSYHRACFKCTRGGCVISPSNYIAHEHRLYCRHHHSQLFKEKGNFSQFDKHEQLKGVPENTVSE*	192

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl04g00807	191	ProSiteProfiles	LIM domain profile.	9	69	IPR001781	-
	Eupl04g00807	191	Pfam	LIM domain	110	165	IPR001781	-
	Eupl04g00807	191	Pfam	LIM domain	11	65	IPR001781	-
	Eupl04g00807	191	FunFam	LIM domain and actin-binding 1	104	174	-	-
	Eupl04g00807	191	FunFam	LIM domain and actin-binding 1	5	75	-	-
	Eupl04g00807	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	37	77	-	-
	Eupl04g00807	191	ProSiteProfiles	LIM domain profile.	108	168	IPR001781	-
	Eupl04g00807	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	102	135	-	-
	Eupl04g00807	191	SMART	lim_4	10	62	IPR001781	-
	Eupl04g00807	191	SMART	lim_4	109	161	IPR001781	-
	Eupl04g00807	191	CDD	LIM2_SF3	110	170	-	-
	Eupl04g00807	191	Gene3D	Cysteine Rich Protein	104	174	-	-
	Eupl04g00807	191	Gene3D	Cysteine Rich Protein	5	75	-	-
	Eupl04g00807	191	CDD	LIM1_SF3	7	68	-	-
	Eupl04g00807	191	PANTHER	OS06G0237300 PROTEIN	4	87	-	-
	Eupl04g00807	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	36	-	-
	Eupl04g00807	191	ProSitePatterns	LIM zinc-binding domain signature.	11	45	IPR001781	-
	Eupl04g00807	191	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	136	175	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl04g00807	Eupl-Chr4	12432992	12438726	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Eupl04g00807		LIM	3.8e-10	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl04g00807	K09377		-	nnu:104595649	369.007