Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00790 ATGCCTTTTGGGTTGGTCTCAGCATGGAACAAGAGGCGGAGAAGCAAATCACAGGACCACAATGACCCTTGGATATATAAACCTGTGGAATATTGGCAACTTGAAGATCAAAACCAGCCTGCCAAAAGACATCAGGGGTCGTCGGTGTTTACGCTCAAGGAAATGGAGGAAGCAACATGTTCATTCAGCGATGAGAATTTGGTCGGGAAAGGGGGATTTGGACGGGTATACAGAGGAGTTCTGCGGTCCGGAGAGATTGTGGCAATCAAGAAAATGGAGCTGCCGTCATATAAAGAAGCTGAAGGAGAACACGAATTCCGTGTAGAAGTAGACATCTTGAGCAGACTGGACCACCCAAATCTGGTTACCCTGATAGGTTATTGTGCTGATGGCAAGCACCGGTTTCTAGTATATGAATTTATGCACAACGGGAACCTACAAGATCACTTAAACGGAATAAGCGAAATGAAGATGGACTGGCCTCTGAGGCTTAAAGTAGCACTTGGAGCAGCAAGGGGCCTTGCGTATCTCCATTCTAGTTCTGCTGTTGGGATACCTATTGTTCATAGAGATTTTAAATCTGCCAACATACTTTTAAATGCAAATTTTGAAGCAAAGATCTCTGATTTTGGCCTCGCTAAGATGATGCCCGAGGGCCAGGAGATGTATGTGACAACAAAAGTTCTTGGCACTTTTGGCTATTTTGATCCGGAGTATACATCGACAGGGAAGCTTACTTTACAAAGCGATGTGTATGCATATGGTGTGGTTCTTCTTGAGCTCTTGACGGGCCGCAGAGCAGTAGACTTGAACCAGGGGCCCACTGATCAAAACCTTGTACTACAGGTTAGGCATATGCTGAACGATCGGAAGAAGTTGCGTAAGGTGATAGATCCTGAGATGAGTCGGAGTTCTTACACCTTGGAGTCGATTGGGATGTTTGCCAACCTGGCATCTCGCTGTGTACGTACTGAGAGCAGTGAGAGACCCGCAATGGTAGAATGTGTTAAGGAGCTACAACTGATTTTCTTTACAAATGCAAAAGCTTTGGGTATGAGCATGCATACCTTCAGAACAGTTTGA 1083 0.4543 MPFGLVSAWNKRRRSKSQDHNDPWIYKPVEYWQLEDQNQPAKRHQGSSVFTLKEMEEATCSFSDENLVGKGGFGRVYRGVLRSGEIVAIKKMELPSYKEAEGEHEFRVEVDILSRLDHPNLVTLIGYCADGKHRFLVYEFMHNGNLQDHLNGISEMKMDWPLRLKVALGAARGLAYLHSSSAVGIPIVHRDFKSANILLNANFEAKISDFGLAKMMPEGQEMYVTTKVLGTFGYFDPEYTSTGKLTLQSDVYAYGVVLLELLTGRRAVDLNQGPTDQNLVLQVRHMLNDRKKLRKVIDPEMSRSSYTLESIGMFANLASRCVRTESSERPAMVECVKELQLIFFTNAKALGMSMHTFRTV* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00790 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Eupl04g00790 360 FunFam serine/threonine-protein kinase PBS1-like 30 140 - -
Eupl04g00790 360 Gene3D Transferase(Phosphotransferase) domain 1 141 352 - -
Eupl04g00790 360 ProSiteProfiles Protein kinase domain profile. 62 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00790 360 PIRSF ILK 33 356 - -
Eupl04g00790 360 PANTHER OS01G0750732 PROTEIN 32 345 - -
Eupl04g00790 360 CDD STKc_IRAK 68 342 - -
Eupl04g00790 360 SUPERFAMILY Protein kinase-like (PK-like) 48 347 IPR011009 -
Eupl04g00790 360 Gene3D Phosphorylase Kinase; domain 1 29 140 - -
Eupl04g00790 360 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Eupl04g00790 360 FunFam receptor-like serine/threonine-protein kinase NCRK 141 351 - -
Eupl04g00790 360 Pfam Protein kinase domain 63 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00790 Eupl-Chr4 12193619 12198115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00790 46 339 Receptor kinase-like Gene Family AT3G58690 48.161 3.55e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Eupl04g00790 Pkinase 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00790 - - vvi:100251958 638.262