Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00778 ATGGGTGTTCAAGGTCTATGGGAGCTTCTCGCTCCCGTCGGCCGCCGCGTCTCTGTCGAAACCCTAGCTGGGAAAAAACTCGCCATCGATGCGAGCATTTGGATGATACAGTTCATGAAGGCGATGCGAGACGAGAGAGGAGATATGGTGAGGAACGCTCACATCGTAGGGTTCTTCCGCCGCATTTGCAAACTTCTCTTCCTCCGCACCAAGCCCGTCTTCGTCTTCGATGGCGGCACACCCGCTCTTAAGCGTCGCACCGTCATCGCTCGTCGTCGACAGCGAGAGAACGCTCAGGCCAAGATCCGCAAAACCGCCGAGAAATTGCTTCTCAACCATCTTAAGTCGATGAGACTGAAAGAATTAGCCAAGGATATCGAGAACCAAAAACAGAGGAATGACTCAAAGGGGAAAAATGTTGTACCGGAAAACACTGAAGTGACAGAAAATGGTCCCGAGAACCAAAAACAGAAGAATGATTTGAAGGGGAAAAATGTTGTACTGGAAAACACTGAAGTAACGGACAATAGTTCTGAAAGAAATGATAAAATCACTGGGGGTTATGATCAGGAAGCCCTAGACGAATTGCTGGCAGCATCTCTTGCGACAGAGGAAGATGGGAGTCTCACTGGCAAAGCATCAACTTCTGTTGGTGGCATTGCTTCTGAGGAAGACGATGGAGATGAGGATGAGGAGATGATACTTCCTGTAATGCATGGCAAAGTTGATCCATCTGTCCTGGCTGCTCTGCCTCCTTCTATGCAACTTGATCTTCTTGTTCAGATGAGAGAGAGATTGATGGCAGAAAACAGACAGAAGTATCAGAAAGTAAAGAAGGCCCCTGCAAAATTTTCTGAGCTACAAATACAAGCTTATCTCAAAACAGTTGCTTTTCGTCGAGAGATAGATGAGGTTCAGAAATCGTCTGCTGGAAGGGAAGTAGGTGGGGTGCAAACTTCTCGGATAGCCTCTGAAGCCAACAGAGAATTCATATTTTCATCATCATTTACTGGGAATAAACAAATACTCACGTCTACTGGAGTTGAGAAAAATGGAGTCGTCGAACATCGGACAATGGGGAATGAATCTGCTTCTTCAGATTCTGTGGATTGCATTTCATCTACTGTTCAGTCTAGTTGTGCAACAGGGTCTGTGGTGGATGAACCTAGAAGGGGTTTTGATGATGATGTTGAGACATACCTTGATGAGAGGGGGCGCATTCGGGTTAGCAGAGTAAGAGCTATGGGCATCCGTATGACCCGAGATTTACAACGGAATTTGGACTTGATGAAAGAGAGAGAGCAGGAGAAGATAAAGGAAAATAATTTTACAAACATAGAGGCTATCTTCAACAATAAGGTATTTGGTGTCCCTGAAAGTATTTCTGGAAATAACCACTTCCTGGAATCTTCAGATGAAGGAAATGATGAAACCATTAGCTTAAATGACGGAATAGATACATTAGCACAAGGTGAGAACCATCAGATTCATGAGCAGTCTATACTTAAAAACAAAACTGCTATGGAAATATCCTTCTTTGAAGATCGCAGAGGTACAGACGATGATGATGATCTATTTGCCAACTTAGTTGAAGGAAGTTCAGTCATGATATCTTCTGCTGAAAATGCTCCTCCAGGAAAACATTCTTGTGCTACCACTTCAGATTGTGCCTGGGAGGAAGGAATTGTTGAAGAAAAAGGTGGTAGTGTTAGCAATGATTTTAAGGAGGAAAGTCAACCATCTTTGGCCAAAGGAAACAATAGTGATGACAGTGAAGTGGACTGGGAGGAAGGAGTTTGTGATGTTCCTAGAAATGCTTCTCCATGTCCAACTAAACATAAGAAGGCTGTTTCAAGGGGCTGTTTGGAAGAAGAAGTTGATATTCAAGAAGCAATAAGGAGAAGTCTTCAGGATTTTACAAAAGAGAAGTCTGTTATTACGTCTACTGAAAATCAAAATATCAAAAATTCCAGAGAAATGGTTAACCAACATGCTACAATCGGATTTCCCTTTCAAGTTTTGACTCCTGAGAAAGATAGAGTTGATTCTCTTAATTTGCCAGTAGAAAATGATCTTCAGCAAAGTCAAACATCATGTGAGGCTGTGGCTAGACTTGAAAAGCTGGATCATATGGGTAAAAGAGAGATCCTACAAATCAATGATCCTCCAGAGAGGCAATTGGCTTCCTCCATGGCGATGGGAGTTGAAACTGATGAAAAAGCAGTACTGATAGATAAACCATGTGAAAGATACCCGGTTCCCAGTCCTGGAGTTTTAAGTGAAGAAGCCAGTGAATGTAGGACTGTTACTCCGATGGAACCAAAGGAGGTGCACTTGATTGCTGAGCAATGCTTGGGTACTTCTAAAGAGGGTGGTGGGGTATATAGTTTTACAGGGTCACATGGTTCTTCTAGGGTTAGTTCTCATGTTTCTGCTGCAGTGATGAGTGACATGCCTGAGGTTATTATTTGTGACGCTCACTGCAATGATTCTGAGACTGCACCAACATGTCATTCATACGAGAAAACTGACAGTGCCATTTCTTGGGAGGAATCTTCTACGAAAGAAATAGTGACTGATGTTGACATAGAGCAGAATCTGGTTGCAGAAAAGAATTGTGATGTTCTTTCCGAGGAAATAGAGCATACTGGGGATGACTTTGCAATTCAGGACAACAGGGAGGTTCATATGGAAGTGTCAGAGGCCAGTTTGGATAAGGAAATGCTACTTCTAAGACAAGAGCGTATACATTTAGGAGATGAGCAGAGAAAACTTGAACGTAATGCAGAATCCGTCAGCAGTGAGATGTTTGCAGAATGTCAGGAACTGCTGCAAATGTTTGGCTTACCATATATCATTGCACCTATGGAAGCAGAAGCTCAGTGTGCACACATGGAATTAGTGAATCTTGTTGACGGTGTTGTGACCGATGACTCGGATGTGTTCTTGTTTGGGGCACGAAGTGTTTACAAGAATATATTTGATGATCGCAAATACGTTGAAACGTACTTCATGAAGGACATTGAGAGTGAGCTTGGGTTAACTAGAGAACAATTGATCCGCATGGCACTGCTTCTTGGGAGTGATTATACTGAGGGTGTTAGTGGGATTGGTATTGTCAATGCTATTGAAGTTGTACATGCATTTCCTGAGGAAGATGGCCTCCAGAAATTCAGGGAATGGCTTGAATCCCCAGATCCAACCATTCTAGGGAAGCTTGGTGTTCAAGCTGGATCTCTTTCAAGGAAAAGAGGGTCAAAGGTAAGTAACAAGGATGCAGATTCCGAAAATAATATCGAGGGAGGCTCTGCCGTTGAGGGAACTGTTTCCCAAAGTCATGATGACAAGCAGTCTGTAGATAGCATCCAAAACATAAAGCAGACCTTCATGGATAAGCATAGAAATGTGGGCAAGAACTGGCATATTCCTTCATCATTTCCCAGTGAGACAGTTATATCTGCGTATGTCTCTCCACAAGTGGACAAGTCAACAGAGTCTTTCTCGTGGGGAAAGCCAGATCTGTTTGTTCTTCGCAAATTGTGTTGGGAAAAGTTTGGATGGAGTAACCAGAAGGCTGATGAGTTGTTAGTACCGGTTTTAAAGGAGTACAACAAGCATGAGACTCAGTTACGGCTGGAAGCATTTTACACATTCAACGAGAGATTTGCAAAAATTCGTAGCCAGAGAATTAAGAAGGCTGTAAAAGGAATAACGGGGAGCAGATCTTCAGAGTTGATGGATGATCTTCCACAAGAAGCTTCTGAAGTTATGAAAAAAGGAAGGGTCAGCCCCACTGCACCAGAGGAAAATGAACCAGAGAAGTCTATAAATGAAAAGAAGGATACTGTTGCTGGAAAAAAGAGCAACACTTCAGAAAAATCAACAACAAAGCAGTCAAGGAAAAGAAGGATTGTGAGCAAATTTATGCCATCTGAAGTTGGGCATTCAGAGCCTCCTATTCGGAAGGAAGGCAGACGAAATACCAAGAAAGGGTCAAATGGAAATGTGAGAGGCAGAGGGAGAGGGAGAGGGAGTGGGAGTAGGGTAGGAAGAGGGAGGGTAAAAGAAGCTCCTGGCTTTGAATCAACTGAAAACAGCTCTAGTGATGGTAGTGATGACAATGACGAACTGGAGATGCAAGTTGAAAAGACAGTAAGGTCTTCTGAAGTGCGTAGGTCAACGCGGCCACGGAAGCACATAAAATACACGTTAAATGACTTAGATATTGATGGCCTGGATGAGTCACCAGACCAATTTGATGGGAATTGCACGGATGGAGCAGTGGAGCAAGAACCATTTCGCGACGAGGGTATGTTTGGAGATGCTGCTTGTGGTCTCAACGAAAAGGATGGCAATCTTTCAGTCAATGATGGCTTTTGTAGAGACTACCTTGAAATGGGAGGTGGATTTTGCATGGATGAAGATGAGGCAAAAAATGACCCAGTTCAGTTGGTTTCAAGCCCGACAAGAGTTACTGACTGTGACAATGGCGATCCTTCCATTGAGGATGGATTCTCTAGGGACCATGTTAAAATGGGAGGTGGATTTTGCATGGATGAAGGTGAGCCAGATACTGACCCAGTTCAATCGGTCTTGAGACCGACAAGAGATTCGGGCGAACTTTTAAGTGGACAGACGGTGGGTACTCTTGATGCTAAAGGCAATGATGATGACTTGACAAATGTAGGTACCTCACTGGAGGAAAATCCACAGGAATTGCAGAAAACTGATTTTGGTACAACGTCTACAACAGGTTTAAGTGCTATGCCTTTCTTGCGAAGAAAACGGAGGAAGGCTTGA 4800 0.435 MGVQGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDERGDMVRNAHIVGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLLNHLKSMRLKELAKDIENQKQRNDSKGKNVVPENTEVTENGPENQKQKNDLKGKNVVLENTEVTDNSSERNDKITGGYDQEALDELLAASLATEEDGSLTGKASTSVGGIASEEDDGDEDEEMILPVMHGKVDPSVLAALPPSMQLDLLVQMRERLMAENRQKYQKVKKAPAKFSELQIQAYLKTVAFRREIDEVQKSSAGREVGGVQTSRIASEANREFIFSSSFTGNKQILTSTGVEKNGVVEHRTMGNESASSDSVDCISSTVQSSCATGSVVDEPRRGFDDDVETYLDERGRIRVSRVRAMGIRMTRDLQRNLDLMKEREQEKIKENNFTNIEAIFNNKVFGVPESISGNNHFLESSDEGNDETISLNDGIDTLAQGENHQIHEQSILKNKTAMEISFFEDRRGTDDDDDLFANLVEGSSVMISSAENAPPGKHSCATTSDCAWEEGIVEEKGGSVSNDFKEESQPSLAKGNNSDDSEVDWEEGVCDVPRNASPCPTKHKKAVSRGCLEEEVDIQEAIRRSLQDFTKEKSVITSTENQNIKNSREMVNQHATIGFPFQVLTPEKDRVDSLNLPVENDLQQSQTSCEAVARLEKLDHMGKREILQINDPPERQLASSMAMGVETDEKAVLIDKPCERYPVPSPGVLSEEASECRTVTPMEPKEVHLIAEQCLGTSKEGGGVYSFTGSHGSSRVSSHVSAAVMSDMPEVIICDAHCNDSETAPTCHSYEKTDSAISWEESSTKEIVTDVDIEQNLVAEKNCDVLSEEIEHTGDDFAIQDNREVHMEVSEASLDKEMLLLRQERIHLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAHMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIESELGLTREQLIRMALLLGSDYTEGVSGIGIVNAIEVVHAFPEEDGLQKFREWLESPDPTILGKLGVQAGSLSRKRGSKVSNKDADSENNIEGGSAVEGTVSQSHDDKQSVDSIQNIKQTFMDKHRNVGKNWHIPSSFPSETVISAYVSPQVDKSTESFSWGKPDLFVLRKLCWEKFGWSNQKADELLVPVLKEYNKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGSRSSELMDDLPQEASEVMKKGRVSPTAPEENEPEKSINEKKDTVAGKKSNTSEKSTTKQSRKRRIVSKFMPSEVGHSEPPIRKEGRRNTKKGSNGNVRGRGRGRGSGSRVGRGRVKEAPGFESTENSSSDGSDDNDELEMQVEKTVRSSEVRRSTRPRKHIKYTLNDLDIDGLDESPDQFDGNCTDGAVEQEPFRDEGMFGDAACGLNEKDGNLSVNDGFCRDYLEMGGGFCMDEDEAKNDPVQLVSSPTRVTDCDNGDPSIEDGFSRDHVKMGGGFCMDEGEPDTDPVQSVLRPTRDSGELLSGQTVGTLDAKGNDDDLTNVGTSLEENPQELQKTDFGTTSTTGLSAMPFLRRKRRKA* 1600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00778 1599 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Eupl04g00778 1599 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Eupl04g00778 1599 ProSitePatterns XPG protein signature 2. 948 962 IPR019974 GO:0016788
Eupl04g00778 1599 MobiDBLite consensus disorder prediction 565 594 - -
Eupl04g00778 1599 MobiDBLite consensus disorder prediction 1316 1330 - -
Eupl04g00778 1599 MobiDBLite consensus disorder prediction 573 588 - -
Eupl04g00778 1599 SMART xpgineu 945 1014 IPR006086 GO:0004518
Eupl04g00778 1599 MobiDBLite consensus disorder prediction 204 227 - -
Eupl04g00778 1599 MobiDBLite consensus disorder prediction 1081 1117 - -
Eupl04g00778 1599 Coils Coil 119 139 - -
Eupl04g00778 1599 Gene3D - 1014 1070 - -
Eupl04g00778 1599 FunFam DNA repair protein UVH3 1 149 - -
Eupl04g00778 1599 FunFam DNA repair protein UVH3 893 1013 - -
Eupl04g00778 1599 SMART HhH_4 1016 1049 IPR008918 GO:0003677|GO:0003824
Eupl04g00778 1599 Gene3D - 888 1013 - -
Eupl04g00778 1599 Pfam XPG I-region 948 1029 IPR006086 GO:0004518
Eupl04g00778 1599 FunFam DNA repair protein UVH3 1014 1071 - -
Eupl04g00778 1599 CDD PIN_XPG_RAD2 2 92 - -
Eupl04g00778 1599 MobiDBLite consensus disorder prediction 1262 1299 - -
Eupl04g00778 1599 SUPERFAMILY PIN domain-like 2 1029 IPR029060 -
Eupl04g00778 1599 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1014 1223 IPR036279 -
Eupl04g00778 1599 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 1464 - -
Eupl04g00778 1599 Gene3D - 1 150 - -
Eupl04g00778 1599 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Eupl04g00778 1599 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Eupl04g00778 1599 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Eupl04g00778 1599 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Eupl04g00778 1599 MobiDBLite consensus disorder prediction 1254 1396 - -
Eupl04g00778 1599 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Eupl04g00778 1599 CDD H3TH_XPG 1017 1162 - -
Eupl04g00778 1599 MobiDBLite consensus disorder prediction 1534 1599 - -
Eupl04g00778 1599 MobiDBLite consensus disorder prediction 1095 1117 - -
Eupl04g00778 1599 SMART xpgn3 1 98 IPR006085 GO:0004518
Eupl04g00778 1599 MobiDBLite consensus disorder prediction 127 185 - -
Eupl04g00778 1599 MobiDBLite consensus disorder prediction 1377 1391 - -
Eupl04g00778 1599 CDD PIN_XPG_RAD2 931 1015 - -
Eupl04g00778 1599 MobiDBLite consensus disorder prediction 1558 1588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00778 Eupl-Chr4 12011263 12028285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00778 1 107 Core DNA Replication Machinery Family AT5G26680 34.188 1.76e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00778 K10846 - ming:122079590 1680.23