Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00769 ATGTCTGGCTCTGATGCCCTACAAAGACAACTCCAACAACTTTTCCATCTCCATGACTCAGGTCTAGATCAAGCTTTCATAGATGCTCTCCCAGTCTTTCTCTACAAAGAGATAATGGGTCTGAAAGAGCCCTTTGATTGTGCTGTTTGTCTTTGTGAATTCTCAGAAGAAGATAAGCTGAGACTGCTTCCCATATGTAGCCATGCCTTCCACATAAACTGTATAGACACATGGCTCCTCTCAAACTCAACATGCCCTCTTTGTAGAGGTGCCCTTTTCACCTCTGGCCTCGCCATTGAAAACCCGGTCTTTGATTTTGATGATCCAAGGGAAGAAAATGGTTTACAAGGTGATTGTGAAGATGGGTTTTCTTCTGGTCAGAAACCAGTAGAAATGGAGGAGATTGTGGGTGAAAAGAGGGTTTACCATGTGAGACTTGGTAAGTTTAGAAGTGTAAACAATGAAGAGGAAGGAGGAGAAGGAGGAGAGAGAACAGAAGCAGAAACCAGCAGTAGAAATTTGGATGCAAGGAGATGTTTCTCAATGGGTTCATTTCAGTATGTGGTGGGTGACTCAAACCTGCAAGTGGCCTTGTCCCATGATGGAGATGTTAGTGGTGATTTGAAGCTTGTGAAAGGGAGAGGACAAAATGGGAATTCTTCAGTTGATGGGGATGTGGAGGGGAAGAAATTGAGTAGTAAGAGTAAAGGTGAGAGTTTCTCTGTTTCAAAAATCTGGCTGTGGTCTAAGAAGGGCAAATTTCCAAATTCTTCAGATACCCATATGGGTATTTCTTCTTCCCTTAATGTGGCCTTACCATGGACTGAAAGAACTCAGGGTATGTGA 846 0.4314 MSGSDALQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIMGLKEPFDCAVCLCEFSEEDKLRLLPICSHAFHINCIDTWLLSNSTCPLCRGALFTSGLAIENPVFDFDDPREENGLQGDCEDGFSSGQKPVEMEEIVGEKRVYHVRLGKFRSVNNEEEGGEGGERTEAETSSRNLDARRCFSMGSFQYVVGDSNLQVALSHDGDVSGDLKLVKGRGQNGNSSVDGDVEGKKLSSKSKGESFSVSKIWLWSKKGKFPNSSDTHMGISSSLNVALPWTERTQGM* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00769 281 ProSiteProfiles Zinc finger RING-type profile. 47 89 IPR001841 -
Eupl04g00769 281 Pfam Ring finger domain 46 89 IPR001841 -
Eupl04g00769 281 SUPERFAMILY RING/U-box 26 94 - -
Eupl04g00769 281 CDD RING-H2_EL5-like 46 89 - -
Eupl04g00769 281 FunFam RING-H2 finger protein ATL46 9 94 - -
Eupl04g00769 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 94 IPR013083 -
Eupl04g00769 281 SMART ring_2 47 88 IPR001841 -
Eupl04g00769 281 MobiDBLite consensus disorder prediction 210 233 - -
Eupl04g00769 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00769 Eupl-Chr4 11905037 11907819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00769 6 253 C3H Transcription Factor Family AT2G18650 45.421 1.31e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00769 - - ming:122073052 434.876